RNA id: TU193329


Basic Information

Item Value
RNA id TU193329
length 342
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G130944
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6227746 ~ 6228087 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtctactctgagagttagtagacaagtagttgaaaattaattaaaattagttgacatgtagttacaaagttacttatagtgaGTTAAATATCAAAAGTGGACTATCAGTATGAAGTCGAACCCAACGTTTTCACAAAACTTAACCCCTTCAGACCCTGCGTCCACTGAAATGGACAtcacgtgatttttttttttttttttgtttaaccagataatattttatttttcataacatGAGCATTGCATGGTCGTTGATTGGTCACTGATCAACCAATCACAATAAAGACGTGACTCCTAACTTAACCTGATTGAGCTACAGGCATGACAAAAGAGAGACATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193325 lncRNA upstream 58387 6167626 ~ 6169359 (+) True G130940
TU193275 lncRNA upstream 274276 5923032 ~ 5953470 (+) True G130893
TU193281 lncRNA upstream 293029 5798511 ~ 5934717 (+) True G130899
TU193272 lncRNA upstream 294904 5930852 ~ 5932842 (+) True G130891
TU193270 lncRNA upstream 294954 5930852 ~ 5932792 (+) False G130891
XR_006247115.1 lncRNA downstream 26919 6255006 ~ 6263954 (+) True LOC122324219
TU193336 lncRNA downstream 103578 6331665 ~ 6334244 (+) True G130950
TU193412 lncRNA downstream 143748 6371835 ~ 6401298 (+) True pdia8
TU193413 lncRNA downstream 143748 6371835 ~ 6391731 (+) False pdia8
TU193415 lncRNA downstream 164829 6392916 ~ 6393957 (+) True G131010
XM_043217546.1 mRNA upstream 65203 6061549 ~ 6162543 (+) True jarid2b
XM_043217189.1 mRNA upstream 344772 5876054 ~ 5882974 (+) True LOC122323385
XM_043217190.1 mRNA upstream 346594 5876050 ~ 5881152 (+) False LOC122323385
XM_043218135.1 mRNA upstream 439953 5785131 ~ 5787793 (+) False LOC122323983
XM_043216946.1 mRNA upstream 474829 5745830 ~ 5752917 (+) False LOC122323254
XM_043217804.1 mRNA downstream 5938 6234025 ~ 6252339 (+) True mylipa
XM_043218022.1 mRNA downstream 38296 6266383 ~ 6344260 (+) True npr1a
XM_043218095.1 mRNA downstream 118702 6346789 ~ 6361192 (+) True ints3
XM_043218448.1 mRNA downstream 137431 6365518 ~ 6377599 (+) False gon4la
XM_043218447.1 mRNA downstream 137469 6365556 ~ 6377599 (+) True gon4la
TU193273 other upstream 304773 5785130 ~ 5922973 (+) False LOC122323983
XR_006246984.1 other upstream 474964 5745801 ~ 5752782 (+) True LOC122323254
XR_006247105.1 other upstream 642091 5583505 ~ 5585655 (+) False LOC122324139
TU192862 other upstream 913568 5223700 ~ 5314178 (+) True G130640
TU193467 other downstream 234996 6463083 ~ 6488760 (+) True G131047
TU193457 other downstream 291833 6519920 ~ 6526080 (+) True G131042
TU193617 other downstream 463887 6691974 ~ 6695456 (+) False ppp1r11
TU193614 other downstream 463979 6692066 ~ 6696204 (+) True ppp1r11
TU193616 other downstream 463979 6692066 ~ 6695456 (+) False ppp1r11

Expression Profile