RNA id: TU193412


Basic Information

Item Value
RNA id TU193412
length 5515
lncRNA type read_through
GC content 0.45
exon number 3
gene id pdia8
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6371835 ~ 6401298 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctcttttttttttttttttttttttttttttttttTCttccattaaaacaaaagatttttatttaactttttctctgtatactttttattataataagacACTTCTCTGCTTGTACATTGCTCCCTTGAACTTAAAAATGGCAACAATTGTGTGTGGGAATGTAAGTTGGGGCGGACAAACTCAGATGCATAccaatatacatacatgtgtgtatatcaAGGTTCCAATAATAAGCCATAGATGCTAGGACAGCAGTAACAACCTCAGGTACCTTGGTATAGTTAGAAGTATAATACAATCTCTGAGTATTTCAAGGAATACACATTgctattcattttcttttttttgcgaTATTGGTACATATAATGTGACCACATCAATGGTTTAAGTTTAAGAGGGATGATAAACAGCACTGAAAGCCGATGGGAGAACGGCTTCCAACGAATAGACCAAGCTGTATCTGAGGATGAAACCATGCTTGGCAAAACGTCTGcaagaaaagtaaaataaacccattttagttattttcctTAGTaggtaggaaaaaaatatatatatatcgatttaactttttttttttttccaatgcaCTTCATTTGGAttaacatatacacacacttgaatgtatataatgaaaatatcctAGATAAAATAAACATCCTAATAGTGTCAGAAAAGGTGGGCAATTGGGACTCGTGTTCGCCTTTCACAAAGAGTTCTATCCTCAAAAGAACACGTTACATATAGAGATCAGATATAAATTCacacatacttttttaaatgcccTACTCACacatacatttcatttgaaagccCTACTTATTATTTCAAAGCTATTCATTAGACCAAGGCATtcccagaaaacacacaaaccccAACTTACACCATTAGGATACAGATGCTGGTCAAAATGAGGAGGGAACAATGCTTTGATCCGTTTCTTTTTAGACGTCAAGCATTTGTATTTCTCGATAACCTGGGCTCAGGCTCCCTGGATGGGCAGGTTTTGTTTGACGTCAGGCATATTGCACATTGAACCAATGTCTCATTTTGTAACACTACTCAAAAAGGGCCACAGACTCCTTGGCATTGACTTGTGTCTCATTGAGATGACTGGTAAATTGGAGATCAGTCCGAGGATGCGAGCAAAACATCTGCTCATAGTTCTGAGACATGTTTCGGGGGACTTTGGAAACACACTGGAGGAAGAGCTTGTGTAGGttccttcacaaaaaaaataaaaataaaaataaaaatgagaaagaaaaaagggactTTACAATGCAGAGGGTGGTCAAAGAGTGATTCTCTAAACTCCCTAGAACTGTTAAGTGAATATAACAGTAGCACAATACTTGTCATGTTCAATAACCTGGAACTGCAGTATGACACCTAGTCAAAGAAGATGCCCAATATACAGCTATTCGTttggaggagaaagaaaaacaaaacaatgaaaaatctttattctaAAGGAGAGTTTTGGAGTTTACCGATTTAAGATAAGTGCAAgacaaaagaaaatctttaaCGGATGTtctcaaaagaaacaaaaccatcTAATTTAATGAGGATCTGACACTAAGGCTAAGAGTCATTTGATTTGTTCACAACAGAAACAACCTTAAAACAATGTGATCCACGAAGAGGAACTTTTGAAGGACCTTCAATTAAGATCACCgtctaataatattaacaaGTATAATGTGCACTATTAGACTACAATTCCATGCGGAGGCCAAAACAGCTAATGAAACTATCTGAAAACCCAAAGCAATGAGCAGAGAGGACCTATAACTTAACATAAGGAAAAGTACACCACATAGTTCTGAGAAGTGGGCATTACagtgattttcaaaaaaaccaaaaaagtctTGAGCATTCCTGTGACAATAGTATTAGAGTTTGAACCAAAAATAAAgagggttttatttaaaaatgagttttaatgaCCTGCtttgcagagaaaaaaaattatatatccTCACCTTTAAGAGgctgaaatgaaaaattaacaACACAAGAAGGGGGGAAAACAAATCTATGATACATTTGTTCTCATTAAAAGAGCAACTTCCAGAATCCAACATGTGATGTGAATACACAAGTACATAATAACAACCTTGGCCTTCCATATATATACTTCGAGCCACAGttcttacacaaacacacttaacGTGTGCAAACCCAGCATACACAAACCAAGCACAACTTTGTAAGGTTGATGTCATTTTGTGCTTGTATATGCAAACATAAATGGGTTGTGTgatcaaatgtgttttcagtcagcaaatatttccattaaaatggGGGTATAGCATGTAAAATCTCAGAGTACAGTTTAGGATTCTTGGGATAGTGAAAGGACACAGAGTGTGAATTTACAAATAAGGGAGAAAAATTTATAAACCAAAAGAACTAGAATGTGGTCACGGTATTGGTAACTAATCTTTTACGATAATCAAGTGTTAACATGTTAAGGGGGGTAAGAGGTTTTACAGAAAAGAGTGGCCAATGATAGAGGGgtgcatttgaaatatttccaaattaaaaaaaaaaaaaaaaaaaaaaaaaaacccaaagcaTCACTTCCTGTTCTTAGGAGAGGGCCAGTTGCCACGTCTCTCACCACGATTGCCCCCGCCATTGCCAGCTCCACCCACCGCCCccagcatTAACCCTTCTGTTCTGCCTCTCCATTCCAGGGCGCTGACTGGAGAAGCTTCTCTTGCTGGTGGCCAATTCTTTAGCTGTCATCTCTCTCTCGCCCCCACCGCCACCTCCACCACCTCTTCCGGAtggatggtggtggtggtgatggtggtgatgatggtggtgggAGGGATAAggttttcctcctcctccaccctcTCTTTCTCGAAACTCGGTGAAATCGCTGCTCTCGGAGGCTGTTTCCCATTCCTCGTTGGCCTGATCAGAGTTCTGGTTAGAGACGTCTGGAGATTTGGCGCCCCCAGCTGGGTTATGGTTGTGATGGTGTTGGGGGTGCGACTGGGAGTTGCCCTGGTAGTGATGATGGTGGTGGCTATTGAAATTTTGGTTTCCACCCCCAAGGTtgctgctgttattattattgttagagGTTGCTGACACGctgtgttttgcatttgcaaCAGCTGCGGTGGACGCGTTGGGAGTGCTATTGGTTTCTTGCAGGGAGTTCTGCAAAGGTGAAGCAGGCCGCTGCTGTTGTCCAGCTACGACTTCAATAATTCCACTACTTCCGTTGATACGGGCTGCATTCTCTCGCTCTTGTTTAAGCCTGCGGAATCTGGGAGGCTTGTCCTGCTGATGTTGGGATCGCCCGTGGCGTCTGCGACGAGGGGGCCGCTCAAATCCCCTGTTAGGGAAACCTCGTCCATCTGGGGCAGACAGAGGAAGAGTCTGGGCAGGAGTGCCAGTGGAATTTGGAGGAACATTACTTGAGGACAGTGGGGCTCCAGCGCTTCCGTTCTCAGTGGACCCCTGCTGGACAGCTGTAGGCACAGAGGGATTAGATGCGGAGGGATTTGCACTTTGACTCTGAGACTGATTCTGGTCTGCAGCTTTCTTCTTATCGACATGGGCTCCACGGCCTGAATCTTTAGGAGGGGGAGGCTGGGAGGACGTCTGTTGCTTTCGCACAGTTGCAGATTTTGCAGACCAGCCGTGAGAACCAGAGCCAGGTCCAGATCTGTGTCCACCAGACACTGCCGTACTGCCCCCACTTCTGTGGAGACCTCCTCCAGAACCACCACCACCGCCTCTACCACGTCTAGAGGGCACTCCCCTTGGTGTGAACACTCTTGTCTGAGAATTTCTGATTGGAGCTGAAGACGACGAAGGAGGTTTCTCTCCTCCAACGCCAGTCTTGGTGTTCATCTTTCGCTCTTCCTTGTCAGAGTGAGCAAGATCGCTACCGGCACTCTCACTGCCCGTTTCAGATCCCCGTTGTCTCCTCCTCTTTGGCACCTCTTCATATTCAGAGCCTTCACTTCGAGTCTCACTTCGGTTCCTAGCACGTCCTGGGTTTGGCTGAGAGCCCCCATGTCCATGCCTGCCACTGCCAGAAGATGCCTCTCGCTTGTATTCTTGATTAGAAGGTGCATGGTGGTAGCCACTGTTGGCAGCTGATCTATAATCTCTGCTGCTCCTGCCACCTGCTTTGCCACGACTGCCACCGCCTGCACTGCCAGTGTAAGTGCCCCTGTAGCCTCTGCCTCGGCCATAGAACTCTCCTCGGCCACGGTTGGATCGGCTACCTCTGGACGAAGATGCATGGTAGGTAGTGCTCCCTCTTTCAGCAGAATGTTCTCTTTCCCTCCTGGACTGTGGAGCTGAAGAGCCAGAATTCTGAATCGAGCCTTCTCCATTTTTGGATCCTTTACCTGTACCCCCAGTGTTACCTCGCTCCTTTCCACCAGTTCTGGGTTTATTTGATGAGACTGCATCATCTTTCCCACCAAGTGCTGAGGAGCCTTGAGCCCCAGAGGCAGTTTCTTGTTTGGTTGCAGTCTGGCTAGCATCTTGTTCTTTATCTTTACCAGAGACTCCAGTGGTCTTTTCTCCACCTCCTTCACCACCttctcttttcatctctttaagTACTGGTCTCTTAATGGGACCTGCTCGCTTGGCTGTGGTGCCATCTGATTGAGTAAAGGATTTGCTCTCAGCCCCTTGATTTGCAGGTTCTTCAGTATTTCCACTCATTCCAGAGACTGGAGCTTTTCTGTTATGGATTGAGCCCCCACTCGTGTTACTGCTACCAGGCCTCGGGCCCCAGTGTGTCTCAGTTTTGTGTTCCCGACTGCGAGGGTTGGCTTTAGGGTGGTGCTGCTGCGCAGAATGCTGCTGGGGCTGATTTTGTGCATTTCCCATTTTCTCATGTCTTCTTCCTGAAACATGAGAAGATCCAGTATCATGTTCAATCTGTGGTGGGACCTGATTATGTAAGGACTGTTTTCCACTACCATCTTCTCTAGCTGAGGAAGATGATGACGATGAACAGGAAGGGGAAAGGGACAGCTGATGGAGCGGAGGTGAAGGGTCACTCTTTTTAGGCTCTCCCCCCTTTTCTCGCTCTCTGCCATTCTCTTGCTTATGAGGATGAAGAGAAAAATGAGGGGCATGAGTAGGGGGACCATGGTGTTGGAGATGTGAGTTGGTCTCCAAGGCAGAGTGATCTGAACGACCATTGCGGTCATAATGGTGATGAGGAGTCCCCCAGATTTGGCTCTGTTGACTACCCTCCTGGTGGCCAAAACCATGCAGTGTCCCTCCACTGCCTGCCCTTTGCTGCAAGTGGGAGCCCATTCTGGATCCACTGTCATGGTAGCTACTATAACCTCCTCGCCCACTCATAAAGGGCTGATGATGGGCATGGTGGCTAGCACCCTGGCCCCCAACTTGAATCCCAAGAGGTGGTGGGGTTTGGTTGGATGAGCCAGATGGAGAGCTGGGTGGCTGAATGGGAGCGGTGCCTCCCTCCCGCATAAGTACTGGAGGAGTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193336 lncRNA upstream 37591 6331665 ~ 6334244 (+) True G130950
XR_006247115.1 lncRNA upstream 107881 6255006 ~ 6263954 (+) True LOC122324219
TU193329 lncRNA upstream 143748 6227746 ~ 6228087 (+) True G130944
TU193325 lncRNA upstream 202476 6167626 ~ 6169359 (+) True G130940
TU193272 lncRNA upstream 438993 5930852 ~ 5932842 (+) True G130891
TU193423 lncRNA downstream 4087 6405385 ~ 6409741 (+) True G131016
TU193522 lncRNA downstream 237183 6638481 ~ 6639229 (+) True G131093
TU193784 lncRNA downstream 555271 6956569 ~ 6956786 (+) True G131241
TU193788 lncRNA downstream 575232 6976530 ~ 6976854 (+) True G131245
TU193792 lncRNA downstream 580652 6981950 ~ 6982175 (+) True G131249
XM_043218095.1 mRNA upstream 10643 6346789 ~ 6361192 (+) True ints3
XM_043218022.1 mRNA upstream 27575 6266383 ~ 6344260 (+) True npr1a
XM_043217804.1 mRNA upstream 119496 6234025 ~ 6252339 (+) True mylipa
XM_043217546.1 mRNA upstream 209292 6061549 ~ 6162543 (+) True jarid2b
XM_043217189.1 mRNA upstream 488861 5876054 ~ 5882974 (+) True LOC122323385
XM_043217349.1 mRNA downstream 33934 6435232 ~ 6443128 (+) True LOC122323487
XM_043217346.1 mRNA downstream 33934 6435232 ~ 6443128 (+) False LOC122323487
XM_043217347.1 mRNA downstream 33934 6435232 ~ 6443128 (+) False LOC122323487
XM_043217350.1 mRNA downstream 34368 6435666 ~ 6443128 (+) False LOC122323487
XM_043218029.1 mRNA downstream 72311 6473609 ~ 6477150 (+) True nelfe
TU193273 other upstream 448862 5785130 ~ 5922973 (+) False LOC122323983
XR_006246984.1 other upstream 619053 5745801 ~ 5752782 (+) True LOC122323254
XR_006247105.1 other upstream 786180 5583505 ~ 5585655 (+) False LOC122324139
TU192862 other upstream 1057657 5223700 ~ 5314178 (+) True G130640
TU193467 other downstream 61785 6463083 ~ 6488760 (+) True G131047
TU193457 other downstream 118622 6519920 ~ 6526080 (+) True G131042
TU193617 other downstream 290676 6691974 ~ 6695456 (+) False ppp1r11
TU193614 other downstream 290768 6692066 ~ 6696204 (+) True ppp1r11
TU193616 other downstream 290768 6692066 ~ 6695456 (+) False ppp1r11

Expression Profile