RNA id: TU193467


Basic Information

Item Value
RNA id TU193467
length 4448
RNA type TUCP
GC content 0.41
exon number 2
gene id G131047
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 6463083 ~ 6488760 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTGCGTATCCCTGTGGTTCTCAGAAAAGCTCCTCCTCATCATGTCGGTGACCCTCAGGGCCTCCACACGCAGCAGATTGAGGATCATGGTGTAGGTCAGTCTGAACTGAGACTGCAGCACTGTCGGCTTCCCCTgacacagagaacaacacaTTAACACCATCTCTCTGTGCTCCTGCATATTTAACTCCAATTTATGCAAATGtgacatatgtgaccctggaccacaattTCTCAAAATCAGAACGACGActaaataagctttccgttgatgaatggtttgttaggataggacaatatatGGAAAATCgtacatttaaatgtctttacagaACACGGCCTTTAGTcaacatcctaatgatttttggcataacataaaaatcaatcattttgacctaTACAACGCATTTTTGGCTactgcaacaaaaatataatttgatgaTCATAATACTCTTTGTGCTCATCCAGATTAATTAGAGTGGGGAAATGCAGCGGAGATCCGATCACACAGCGGCCGCTGACAACACGCTGTGTGTTATTACAGCATCAGCTGCTGTTGCCATGACGTCCATGACATGAAGATGATCAGCACACAGATTACTGGCCCGTTTCAGAAAAAGCACATCCCACACGGGTTGAGTCAAACTCATCAGCAGCCGAACCAATTGTTTCGCGCTCTTTATCAATCACTCGAtcgattttatttatatagcgctttaatcaatacagattgtgtcaaagcactgaacagtatcaaataggagaatagagtatGGAAATAACTGGaatatgtggaaaaaaaactccTTGATGCTAGGGGTTGTGGGAGATTCCCAGTATATTGCTATAAGTTTGCAATCATACCATAGTATGAAACATGCCACTGAGGTGGTTTCTGACCGACCCAATTCAAAAGAACCCAGGTCTTTATAGAACAGACATTCTGGCCTCCGAAAATGAATTGTTGCCTCTTTAGTGTAAGTCTATGGAATTTACTTGcccaaaataattttcttcCAAATGAAAAATTAAGCAGAAACTAAtactactaaaaaaataatttcaactaaataaagttgaaataaaacataattattagatgcaacacttaaaaacagctaaatgaaatataaaataatgaaataagtaaaatactaacatttctaacaaaaacaaatttataaatACTTGACAGCCCTTAAAGCTTTACTTAAAGtaaaatgcatcataaaagACTTCATAGTGTATGTcgtaatgcattatatataaacaactttCCATAAATAACTGTAACctatgttaaaatgcattataataattgGAGATTTGTCTGATGTGTTTTAATGCGTTATCCTGTGTAGCAATGAATAGGtaagtattataatgtattgtgaCTGTAGTTACAATCACCCAGTACATAACGCATTACAATGGACtacaaggcataattaatgcattaaaatgaccttcattacagtattaaaatgtaatattatatatagtatgtcAAACGTAGAATAGtacattacaaatgatttttatgtatatttaaaaaagcattaaaatgtcaaaagtacaaaagtaaaaaagtaaaacctaagaaaacttaaacttaaagaaacattaaatggCGGTATGTTCAATGTGGAGAGCACAATGACAGCAGCACTAGTGAATGGCAGGGGATGTGGTCAGTAAATCAGAGACAGCCGTGATGAAACACTAATGAAGAAGAGCCCATTCACCCACACTCCATCCACAAAGGTGCACTCACACGCTCATGACTCCAAAAAAAGACCAGCTGTGTTTGTATTAGGCCCCAGAATAAACAATCAGGCAGCGATTTACAAAGACGAGAGAGGATCTCTCTTCAGATCAGAGTAAAGCCTGGATTAGGGGGAGAGTGCTACAGTAATGGTCCTAACTTCACTAATCATGTCCAATTtgggcttctttttttttggtttttcctATATTTCTGGGGTTTAGTCATCCTGAGGAGAGTCATCAGCAGTGAGGTGTCAGACCTGACCTCAGGAGAGAGATGTTTAACAAACTGACCAGCATCATAGAGTGGAGGTCTCCCATATCATGAACTCCAGCCTTACAGAGGATGATAACGGTCCCTGTAGCGTCCAAACCTCTTCTGCCTGCACGGCCCGCCATCTGAATGTactcacctacacacacacacactttagtaCTGGGATACTCTTAATCAACATCAgactaaaccaaaaaaaaaaaaaaaaaGAAGAGCATACACACTTGAAAAATTCAAACAAGCATTCCAAGTCATATctatcaaactgcagttgggttgttttgattattaataataactcaaacaaatacaaataactcacaaaattaaagtttgttttatagcaAAGGCAGATGACTCCTACAGCTGTTTTTGGCAAAAGCCAGTTGACCAAAAATACTTGTTTAATCTTTGTAATCTCCTCGGATAACAATGTAGATGCCTGACAAACGTTGTATCACAgactgaagttttttttaaagactgttTACTTGGGATTACGTGTAGTTCGGGGAACAGCCATTTCCTCACCACTGCCGcagtttcagcttttattttaaatttgcgaTCCATTTTACATCCTTACTATGAGGtgtttaaatttagattaattaCGAAGGCAAACAAACTTTTCTTTGTGGATTGACCTGCACAGATACATCGTTTACAAAGAAAACAGCAATGTGCGCTAGCTAATAAATATGGCCAGTTTTGATTTCACACAGACTTTAAAAAGTCATAACGGTTTATTAACGTTATCCATTCTCGTTTACTTTTAGTCGGTATTGACGAAGCTCCTTCCGGCTAGCATATCTTTTTAAAGTGATAGATCCCTGGTCACCTGACCTGAATACATTCGCTAAAATGGACTTCTCGGcttctgttaaaaaaacaacaaaaggcaCTTGTTGGCTTCTGCAGTAAAACATGAACTCGCAATACCGgcttttttttgacaaaacgtGTTTCGGGTTCAGACTGTACTGTAACTGGTGAATAATGCAAGccgttcagtttttttaaactggtATCTTTTCCGTTTTTTTACAAACGACCTCTTCATgtcttgttttgcatttcacagaaaaaaagtcagaagtttgaaatgacacaagggtgagtaaattatataatttccCTTATTGGATGTTGCTATGGGAGTGTGGAGTCATTCATTCTCTCCAGGCTCAAACTGCTTTAGCAGCGTTCGGCCTGCACAATGACAAATCTGAATCATTTTGAAGCGACGATACGGTTATTACATACTGATTACAGAGACGTACATTTTCACCTAATGTGCATTGATACTGTGCACAATAAACCTAgaaatgtgtattaataaagtaaataggGTTCATTCTGATTTAATTAACGCATGTGAAATGTGATCTACACCCCTTCCCCAGCACCGCCCTCGTTATTTCGCTGCATTTCCAGATAATTTTGGGCCGTGGTTCTTCCGTGTTGCTCCTTCAGATGGCGGCGTAAAGCAGGCTTGTGGGCAAAGCTGACGTGGCAGTATGCGCACACATGTGGGCGCTCTCCACTATGCAGGTTCATGTGGTCGCACAGTGTTGACTTCTGAGTGAAGGTCTTGTGGCACAGGGGGCAGCAGTGGAGCTTGGATACTCCGCGGTGGACGATCATGTGACGGTTGAGGTTACTGGAGTGGCTGAAGTGCTTCCCGCAGCACGGACACACATACAGCCGGTGTGTTGACAGGGAATGCATGGCTAAGTCCTGTGTTGAGGAAAATGCTAGTCCGCACTGCTCGCACACTACTGGTCCCGCTACGCAGGACGTGGATCCCACCACCGCCACGGACTCGTCAGCAGCTCCGTGTTCATTTGTATGTGTCCCGACTCCCATTCCATCTTCCCCGCTGGAAGCTCCCACACCAAAGTGTGCAGGACCTCCATCGGAGCCAATCTCTTCTCCTTGTCCCTCTCCAGGCCTGTACTCAATGCGGACGGTACCGTCTGCGAGATGCTGATTAGACAGGTAATCGGCTCCAAAGTCTGCTCCAAAATTGCCCATGATCTCATCAGGGGTTGGGAAGCGCCAAGCCTCCTGATAGTTACCCAAAAGCTTACGATCCTTGAAAGTGTATCGTTTCCGGTGTTTAAAGCCTCTTCCTCTGCCTCCCCTCGACTCTCCGTGCCGTCGTCTCCACATGCGACCCGTCCCTCTGAAGCCATTGCTTTTGGCTCGACCATCCATATTGGCCTCCTCTATTCCTGCGTCCAGCTGACTGTGGTCATCCAACACAACAACAGCTTCTCTGTCTTCCTCCTCAGCACCAGAGAGCTTCTCTTGGTCCTGATGTTCATCGTTGATCTGCACCTGAAAGACATCACTCTCAGGCCCGTCCTCTCCCTCGAAATGACCAGATGCATCCGATCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193423 lncRNA upstream 53342 6405385 ~ 6409741 (+) True G131016
TU193412 lncRNA upstream 61785 6371835 ~ 6401298 (+) True pdia8
TU193415 lncRNA upstream 69126 6392916 ~ 6393957 (+) True G131010
TU193413 lncRNA upstream 71352 6371835 ~ 6391731 (+) False pdia8
TU193336 lncRNA upstream 128839 6331665 ~ 6334244 (+) True G130950
TU193522 lncRNA downstream 149721 6638481 ~ 6639229 (+) True G131093
TU193784 lncRNA downstream 467809 6956569 ~ 6956786 (+) True G131241
TU193788 lncRNA downstream 487770 6976530 ~ 6976854 (+) True G131245
TU193792 lncRNA downstream 493190 6981950 ~ 6982175 (+) True G131249
TU193795 lncRNA downstream 525129 7013889 ~ 7014418 (+) True G131252
XM_043217349.1 mRNA upstream 19955 6435232 ~ 6443128 (+) True LOC122323487
XM_043217346.1 mRNA upstream 19955 6435232 ~ 6443128 (+) False LOC122323487
XM_043217347.1 mRNA upstream 19955 6435232 ~ 6443128 (+) False LOC122323487
XM_043217350.1 mRNA upstream 19955 6435666 ~ 6443128 (+) False LOC122323487
XM_043218015.1 mRNA upstream 72020 6377760 ~ 6391063 (+) False pdia8
XM_043217045.1 mRNA downstream 26340 6515100 ~ 6517362 (+) True tnfa
XM_043217559.1 mRNA downstream 160539 6649299 ~ 6659826 (+) True ddx39b
XM_043217558.1 mRNA downstream 160600 6649360 ~ 6659826 (+) False ddx39b
XM_043217383.1 mRNA downstream 203314 6692074 ~ 6696204 (+) False ppp1r11
XM_043217258.1 mRNA downstream 216080 6704840 ~ 6716985 (+) True atat1
TU193273 other upstream 540110 5785130 ~ 5922973 (+) False LOC122323983
XR_006246984.1 other upstream 710301 5745801 ~ 5752782 (+) True LOC122323254
XR_006247105.1 other upstream 877428 5583505 ~ 5585655 (+) False LOC122324139
TU192862 other upstream 1148905 5223700 ~ 5314178 (+) True G130640
TU192863 other upstream 1148905 5223700 ~ 5314178 (+) False G130640
TU193457 other downstream 31160 6519920 ~ 6526080 (+) True G131042
TU193617 other downstream 203214 6691974 ~ 6695456 (+) False ppp1r11
TU193614 other downstream 203306 6692066 ~ 6696204 (+) True ppp1r11
TU193616 other downstream 203306 6692066 ~ 6695456 (+) False ppp1r11
TU193704 other downstream 345109 6833869 ~ 6836858 (+) True G131183

Expression Profile