RNA id: TU193824


Basic Information

Item Value
RNA id TU193824
length 9335
lncRNA type inter_gene
GC content 0.45
exon number 6
gene id LOC122323953
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 7234471 ~ 7257652 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttatTAGTGTGAAGAACTTATAGTCATGATTAAGAACCACTTTAACAAACTTCTAAAGGAGCTGAAAGGTTTCATGCCGGTTAATAACTTTCACTCGTAGCACATACATTGTCCCGTGGCTACTCTGTGGTGAATCAGAGCGTGATAACGAATGGATCTGAAGAAAGTCATGAAGCCATTTTCTCTTGAAGTGTTGCCGTAATTACTGCACTGTACCTTGGTGGGGCAGTGCTGCTCTTAGAAATGCATATGGTGCAGAATTATTACCGTTCAGCTGTGTGCAGTGTAGAATCAAAGAAATACAATACGAAGAGAAAAAGTCGTGCAACTGACGTTCAGTTCCAGCTGATTTTATTTCCTTCTTGGAAAAAGACAAAGTTCTGTACAGAGGTCTGACAGGCAGTGACTTGACACAATTGGCTGGCTTTTGAGTTCACTACTCAAATGTTGAGATATGGTATGGCAAGACAAAACGATATTGTACACAGCATAttgcacaaaatgaaacaataaaacatatctATATATTCCAAAAGTCATGAACAACACTCTTAAACATAGGGATGTATAAAGATATATGTTCTCGTTCCTGTCATGATATATCATCGTCAGACATAAACACGCAatcttttacttattttacacTCAATGTACATAGAAATCTTCATGTTGATCCTCTGCCTTAAACACAACTGCTCTACATAAACCTGAATTCAGAAATACAAAATGCTATTCGCCATGCCATAATATACTAAAACAATTAGCTACATTTAGCCAACAAGTAGAAAAGATTAAATATCCTTGTACAATTATGGAGTGAAGACGTACTTCATTGTTCGTGAATTATAGGCATTTCGACCGTATCTGTAATTCCATCCAGTGGTTCAAACCGAAACGTGTCACTATAAAAGCACAAAGAAATCGGTATTCAAAAAAGTACAGTATCCCCAATAAGGACGCGATAAATCGCAGCTGTCGCTGCTGCAGCTACATACAAGCTCGCTCAGCGCGCGCATCGTAGGCTAAAGACGATTGGTCGTGGAAATGCAgatactgtctctttaagaagcCTGTGGATTGACACTGTAAACATGTTTAGGGGGCAGATTTTTGGAGACAACCCAACCCCCTGGCTTTAAAAATCGGAAATCCAAACAGCGATATTCACCGATTGACACCCCCTCGATagattttgtacaaaaatacactcagaaaataatgaaacatttaatcTCCGTTCCACGTGAGAGGTCATCAATTAAATAATACGAAACGAGTCTAGCCCTTCCGCGAGACAGACGGACATGTGCGTGTgtagcctacacacacacacacacacacacacacaacagactGACTAGAACACGAGCGACGGAGGGGAGGAGAGGAGCAATGTTTGGCCGTTATAAATACATCGATATAAAAAATGCCAGCGCCGAAAAGTTACGAGGATGAAAAAGTAAAAGGCAGatagagagagaaggagagagggaaAACGCTCCTCGGATGAATTTTGGTCCTGATTTGTAGTGTAAAGAGTCGAATCATCTGAGTTGCGTCTGAATCCTGATGTCATGGCGACAGGAAAGCTGgtgattgtgtttgtttttgcgtCTCGTGCGGCGCTGCCGTTCGGTTTCGACGAATCGACACCAGTTTCGCTTCTCAACAGCCTTAAATCGTAATGAAAGCATGCGATGCTGGTCTAACACACGGTTCTGGTAAACAACCGCGAGCGCACGGAACGAGTCgcgcgctcgctcgctcgcgcGCTCTCCGTTCAGTACCTCCATCGAATCAAGCGTATGCGACCAGACTTGTCTTCCGTTTAAAAACGTCCCTTTTTAAAGTCGAGGAGGGCGCGCGGCGGGAACTCGCCACCGCGCGATGACCCCCCATCGCCCGCGTCCAAAAGCGCGCCTCCTTCCAGCACCAAACGAGCAAGCTAAGCACTTTCATCTGCACTCTTGTCAGTGGATAATGAGAACCCACAGTATCTGATGCATGATAAACACGAGGAATCACGTCGTTGACTCGTCGTCTGACTCGTCTCGgaggattatttttttttgcagccctCCGGTCATTTTCTCAATCTGTCCATTCGCAACCAGCGCTCAGTAAGTGAACACCAAGTTGGATATCGTCGATTCGAGCCAGTCCCCTAATATCAACTCGCTCACCTCTGGGGTGCAGTAGTCGGGGAACTCAAAGTGCGAGCCGGAGCCGGACTCAAAGTTGAACTCCAAATCTCTGTCCAGAGGCGCGGTGCCAAAGGTGCTGAAGCTGTCAAAGCCGGGGCTGGGGTCCGCCAGCTCGTCCTCGAACTCCTCGTCCGAAGAGGACGACTGCGAGGAGGACGAGTGCGAGGCGGAGGGCGTCGGGGACGGCGCGCGGGTGTACTTGAAGCGCGCGGCGGGCTCCGCGTCTTCCTTTCCGCTCGCGAGCCCGTCCTCGTAGAGGCTCAGCGGGTCGCTGGATTCCGCCGAGCTGCTCAGAGTGGGACTGGCCGGCACGGCGACGGAGGGCGGGCTGCTATCAGAGCTGCATCCCCCGAACGCGTGCCCGCGCTTTGCTGCTTTCTCGGGGATCTGTTTGGCCGCGGACGCCGACCTGGACTTGTAGAGAGCGTGGTGGTCGGCCGGCACGGAGTGGGAGGTCAGCTCCAGCGCCGCGGACTTTCTGTGCGTCCTGCTGAGAGTTTTGGAGCTCTTCTTGGAGGCAGACTTCGCGCCGGGGCTGCCGCTCACGCGCTCCGCCTTCTCCGCGCTCTTGCCGCTGGATGACTTCACCTTCTTCCGAGGTCGATATTTGTAGTCTGGATAGTCTGCCATGTGCTTGAGCCGCAGCCGTTCGGCCTCGCGGATGAAGGGGATCTTGTCGCTGTCTTTCAAAAGTTTCCAGCGCTTGCCGAGTCTCTTGGAGATCTCCGCGTTGTGCATGTCCGGCGACTGCTCCATGATCTTGCGCCTCTCTATCTGCGACCAGACCATGAACGCGTTCATCGGCCTCTTGATGTGCCCCGATGGGGTTTTGCACCAGGCGATGTCCATTTTATCCCCAGCCGAGTTTGGAGAGCCGGGAGTCGGGGAGGCGTCCATGTCTAGGTCCATCTCCCCAGAATCGGTGGAATCGCCGGGGAGCGCGTCGCTGTTGTTGCTCATGTGCGTCTGCTCCACCATAGCCAGGTCTGTGCCCATGCACTCACCGCAACAGTCTTAACTTTTAATTGCGCACGAAAATCCTACACGTGCTGCAGCTCGGGGAGCGCTAAGAGTTTCTTCTTCGCGGTGTGGTTTTAGTCAGTGTTGGAAACAAAGTTGCTGCCGCCGCTGACTGTCTCTTGGTTCAGCGCGCCGTCCACAAAGGCGCATATCCTCCCGTCAGGAGCTCTGTCAAGTCCCGGCAATGTCGTCAAAATCAACAGTCTGCCGTTCAACTGCCGGTTCGACTGAAAACGAACCCAGAGTGCGCTCTGGACGCGAAGTATCTGAAGCCGTTCAGTGGAAACGGACAAGTGTCTTCAGCATAGTTTGTCGTATGACCATGCGTGGGAACCTGTTTGCGGTGAGGTCACCCAGATAACTCGCAGCGAACGGCCAAAACGGTCACAAGCCAATCGTCCAGCCCGGAGCAGAACGCCGAGGCTCAAGTCCATTTTCCTGTCTGTTGGAGTTAAAGAGGATGCATCACTGATTGAACAGGGGACAGAGAAGCAGAAAAACAGAGCGGCAAAGAGGAAGTTTGGAAGACAGGGAAGTTAGTggagaacaaaaacagaaagaacaTAAAGGTGGGTGAAGAGCAAACTAGATGCATTCTTTGTTTCATACAATTTCCCGTTCATTAATAAATAGCGCTGCTGTTATTCTCCAGAACTTAAGACAAGTATTAAGACAGGGTTTTAAGGTGGTACGTCACACCAAAAAACTTCCCAGCATCCCTTCTGCTCAGCAAACGATGACGCATCATTCTGCTGACACAAGTCAGCTGATTGCTGTGTCACGGCAATGGTTTTAGGCGAGTGGCAGCGCTCCGGCTACAGACGTAGagtctttttttcctcccagaCGCACTGCGGCACAGCCAGACGACTAGAGTGGAGGCACAGGAGCTCACAGCTGCAGTCTACTGGCTTGTTTCGGGGAGGCACAGGAGCCGAGCACTTCCTCTCGAAATACCGTCGCTCTGCTCCTTTTCGCCGTTGAAGGATCGTTTTCATTGGGGCAGAGAGTAGAGCCAAAAAAGAAGACGAACTCTTGAGTCGAGCGACTTGGAATTAACGTCGGTCTCATTTGTAGACAGAAAATTTGGAGAATCGAGCCCGGtgattttttggggggttgtTTGCGCCATCGTTTGCCGATACCAGACCGGGTTCCCAGGCTGAGAAGTGGGCGCTAAAAACTTGGATTCCAGTGCGTCACCTGTCCATCCAGTCGTAAACCTGTCCCACGCAAGACGTCCAGTCAACCGGGCCCGTCTGCGTTCCCATTCGCAGCGACCGGCCAAAGTGGCTGCTCCGCTCCAAGGTTAAGGTGGCTTTGGGTCCTAGACCTAGTCCTTGTCCAGAGGGCAGGGCAGAGGCGAGCAGAAATGGCGACGCGGCAGCTGAGGCGAGCTCAGCCAGACAGACGCGGTGACCTAAATCAGCCCCAGTCATGTCTGGACGCAGCCAGAGCGAGGCAGACGGAGAGGAAGACAGAACGAGTGAGGGAGTGAGAGAGCGACCCACACGTACCGACTCGAACATATACTCGCACTACGtaaaCGGCCGGATAAAAGGCGGGCTGAAGTGAGTTGGTCAGACAGGCCTTGCCAAACCCACAGGCTGTTCTGCTGCTTTGCTACCGCTGCGGTGTTTTGATGTGCGCTACTGTGCAGATGCAGTTTTTGGGCGATAACCAACAAGCTACCGTACAGGAGGAGACTCTGGGAAAGTAAGGGATATCTTTCAAGTAAGAAAATCCTGCTCCAGTGTGCCACAAGTCATGGGGGAAGACAGGGTTTTGGACGGAGAAAGgaaacctttgttttttttctgtccatgGAGAAGTATGTGAAGGCATAAATTCATAATGTCTCTCCAAGTAGCatacagtcaaaccaaaaattattcagacacCAGACATACAGTATAGTGGGTGCAGGACAATAAGTGAAGAtagcaaaataaagcaaactgtGACTTATTATGcctaaaaagtgttttattgtgGATTTGGGACCAAGAAATACCTAACTTATGTAGGTCAACCAATTTATTTTCGACACAGTCTAACACAAGGATGGCTAAAACCAATGAAAGATCAACTGATTTGAGAATAAAGGTAGTTAAATTCAACAAGCAGGGCTTTTCAATTAGAAATATAGCTAAAAGATTAGATATGCCTAAAGGGACGGTCTTTTCCATTGTAAAGAAATTCAGAGAGACTGGCGAGGTGAAGAATTTGCCTGGCcgtggaagaaagaaaaagacgaCAGCCAGAACAGACAGACTTATTAAACAGTTAGcgaagaaaaacagaaagatttCTGCTAAAAAAATTGCTGCTGAAGTCAAAAAGGCCACTGACACAGAACTGTGTGCTCAAACCATTCGCAACAGGCTGAATGACCCCAGAAGAATGCCCCAGAAGACACCCTCGAAATCAAAGACGACGCCTCCTCCAGTTTGCTGAAGAACATATCGATAAGTCTACAGAATTTCGGAAGTCAGTCCTTTGGAGTGATGAGAGTAAATGTGTGGAGGACCAAAGGAGAAGCCTTGAAGCCCCAGTGTCTTACTCCTACTGTAAATAATGGAGGGGGCAATGTTATGCTGTGGGGGTGTAGGGCAGCTAGTGGACTAGGCAAACTACATTTCATTGATGGAACTATGAACTGTGAGTGGAAGTTCTCCAGAGTCAGATGCTGCCGTCAGCCAGGAAGCTCATGGGCCGTCGTTTCATATTTTAGCATGATAATGGAACCaaacacaatgcaaaaaagCTCTGGCCACCGCAAAGTCCAGATCTAACCCCGACTGAGCATATCTGGGAGGTGATGGAACATCTTAATCTCATACTAACAGTTGTCTGAATCATTTTAGGTTGACTGTAATCTGTTACATACCTTTCTACCAAAGTTATCTGATATTATCAAGATTAATTCATGCTGACAGTTTAATTCTGAGCTCTTGTCATATCTTCTAAACTGTTGAAAATAAACTTtcataatgtgagaaatgttaAAGGTGTCTGGAATTTTTGGTTTGACTGTTGGGAAAGCTATTGTAAAACTAGCTTGCTAAGGTAAGAcacatttaaagcagttaaaCTACTGTCAGTGTACTTAAGATAGCAGGCTAAAAGTAGACTGAGTCAAGCTATTTAAAAAGGCagtaaaattctgtcatcttttactcaacctcaagttgttcaaaacctgtattaattttctttcttctgttgaacacaaggTGTTGTAGATCAGAAGGTAACCTTGTTTTGGTAAcctttgactttcattgtatggtcAAATAAGACAGACATTTCTAATTAATCAGATAATCAGGTTTTTGATTGAATGTACAGCGAGACTAAACATATAAACTcctcattattatttaattttatttagtttaattgtattatcttgttttcttttttttatttcaaattctcACCAAggcttgaatttatttaattgaaaagctAGGTCAAAAACATCTGTGCagcttattgtttttgtgtaaactccaatatattttttcaagtttCTTTGTGTAGttcaaactgcatttattaacagTACATGTCAGTAAATCAatttcatcaatttaatgcgtccttgataataattaaaaatatcatcCCCAGTTACTCCATACTTTCAAACAGTAGtctacatttgaataaatagaAGTAAACTAGAATACAATCTAATTTGCATAACTAAACAGTAGCATTTACCTTAATATTCCCCAAAATATTCTGCTGTACTGCCGTTGATAAATGTAGTTCAGCTAAAACTTTCAGTTATTCTTATTTCCCAGTTATTTCCCAAAACAAGTTGCCAATATAAACCGTTGAACAGCATATCTAGCTTGAGAGGTATAAAGACACTTCAACCGCAGCACCTTCTCACACAAGATCTCTGACAGGAATAAAATTCGGTGCAATTTACACCAAAGTCTATGTGAAAGAGCCCATTGTCACTGTGGAATAGGTAAATACGATATGAGCCTGAACATTCCCTATGCTGGTGTATTTTTCCATAACACCAAGTTGCTCTTTTACACTCATAACCCTACGTGTCACATCCTGCCAGAGGATTTTAAAGACGTTGTGCAATTTTCAATAATGTTCCTCAGGTCCTAAAGGAGCTCAATAACTCCAGGCCTACAGAGGCCACTGAATCAGCATTTCAAAGTGAAACTCCTTTCCACAAAGACCTTTGAATTGAAATAGAAAAGTTTCTCCTTCCCAGCCGTACGGGCTCAACTCTGATTGACCCCTCTCAATCTGTGCCTCTCTGTTGTAAAGAACAGGCATAAAATAAGGCAGAGTTAATAGAGTTTAAGACTAAGAGCCAAACCGCATTGGAATAGGAAGGagatggaaaagagtcaagggAGGGAGAGCGACTGAGGCCGAGAGAGACTGAGCaaagggaggagagagagagcgatccCTAAGGGAGAGGGATTGGGTCCGGGCTGCCTGAGGAGATTCTCGCCTCTAATTGGCTGAATGCCTTGGCGTTCCCACAATGCCTCGCGTTTCAGTGACTTTCTCTAAAGTCTCGAAGGACTCTTCAAGGTTACCGTCACTCTTCAGCGTTATCGCTGCTCTCTAAGCCACTGTAGCAAATCTGCTTTTAGCGTAGCCATGACGGACTATTGagaaaagctgaatattcaaAACCGGAATGGGTCATCATTCAACTTCAACTTTTGTGATATACAGTAGTTCGCTCAGCCCCACAATAAAACAGGCATTAGAGTAAAACATCGATGCTGAACCGTAACTCGATTTTctcatgcatgtgtttgtttttccagcagtCGGAGTCGTGCTGCGACTGAATTCTGTTTGCGTTAATTTCGCCGCCTTCCCCTCAAACAGATTGTTGTGAAATAAAGAGGGTGTAATGAAAAGCGTGCCCTTGAATCCAAAAGCCATTGAGGTGTCTTTTTACTTCCATTCCTGCAGAGATCTGCCTTGTGCTTTTCTTCCAGCATTTGCTAAAGCTAACCGAATAAGCGCGTGTGTGTATCAAAGTGGAATCAAATAAAGAAATCATCTCTGCTTTCATTTTGCCCTCGTCTTTTCTTCAGGAAGCCACAGGTATTAACCAAGCGACGATATTTCAGATATTAAAATGGCAGCCGAAAGGAAACAGTTGTAAGCGCAATTGCGTTACTGTTGTAGCGAGATATTTGGTGCCGCGTTTGCATATGTAATCTGAAATAGATTGATAAGAAGCATAGGTGCGCGCGAACTAATAAACCAAACCCCTCGACCCAAATCTACGCTTTGATCCCATGGCGACGGGAAAATATGCATAAATCCCGTTTCGCATCCAGAACCTGGGCAATTGAGATTTTCAGGAAGCTCCATCTATATAacagtattaaaacatttatgaatgccTACAGAATGAACAAAGTTTGTATTCCCTGTGCGTTAGCAGTTTTCCATAACAATATTTAGCCAGGAGCCATCTTCCTTTCTCAAACGTGAGCTTTCGGTCAGCATTATTATCAATTATGCAGTAGTATTCACCTTCTGCTGGAAATTCATTAGAAGATCAATAGAAATCACTTATGTCCAGCAGCAAAATCATTATATATGTGCTAGAAATCCTTAAGCAGCTCAAGAggggaaaaacattttcaaaggagtattgatttaaaaactaCCTTGGATTTCAGCCAATAGAGTGTTGAGCTCCGCACTTTCAATGGATTACAGCAGTATGGGCTCATACAGTATCTGTGCACGGGGCATTTTAAAAAGGCCTTGgctgtgtatgtatgtaagcAATTACTATAAAGGAGTACAAGGGAATCGTGTGCTGCACTTGTTTTTGAATGTAGAGGTTATATAATATAGGAAGgttatgtaatatttctgttgGAACACAATGTGCTTGCAGCAAACTAACAAACATACCTAGGTAGACACTGACAGCAAGCAATAACATATTATCATATAATAAAACCAATAACTGtaataactgaaataatctTCAAAATGACATGACTTATATTGGATATCATCATTTTTTATAATGAGAGAAAATGGGAGACTGTGCTTTAAATATGACACATATATTAATGACttaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193819 lncRNA upstream 16967 7216018 ~ 7217504 (+) True G131272
TU193799 lncRNA upstream 201880 7032261 ~ 7032591 (+) True G131256
TU193795 lncRNA upstream 220053 7013889 ~ 7014418 (+) True G131252
TU193792 lncRNA upstream 252296 6981950 ~ 6982175 (+) True G131249
TU193788 lncRNA upstream 257617 6976530 ~ 6976854 (+) True G131245
XR_006247110.1 lncRNA downstream 126799 7384451 ~ 7387980 (+) True LOC122324170
XR_006247015.1 lncRNA downstream 170892 7428544 ~ 7443464 (+) True LOC122323469
TU193933 lncRNA downstream 186950 7444602 ~ 7445080 (+) True G131339
TU193945 lncRNA downstream 187793 7445445 ~ 7577849 (+) True G131341
TU193953 lncRNA downstream 193994 7451646 ~ 7452241 (+) True G131346
XM_043218060.1 mRNA upstream 167994 7046613 ~ 7066477 (+) True lpcat1
XM_043216936.1 mRNA upstream 189510 7043439 ~ 7044961 (+) True mrpl36
XM_043216935.1 mRNA upstream 189510 7043460 ~ 7044961 (+) False mrpl36
XM_043217259.1 mRNA upstream 196345 7033583 ~ 7038126 (+) True irx4b
XM_043218004.1 mRNA downstream 98444 7356096 ~ 7376316 (+) True LOC122323892
XM_043217948.1 mRNA downstream 120102 7377754 ~ 7395725 (+) True LOC122323846
XM_043217949.1 mRNA downstream 193456 7451108 ~ 7454765 (+) False LOC122323847
XM_043216943.1 mRNA downstream 323594 7581246 ~ 7590155 (+) True maco1a
XM_043218215.1 mRNA downstream 333862 7591514 ~ 7605226 (+) True ldlrap1a
TU193813 other upstream 167613 7065022 ~ 7066858 (+) False lpcat1
TU193732 other upstream 332073 6900660 ~ 6902398 (+) False med10
TU193704 other upstream 397613 6833869 ~ 6836858 (+) True G131183
TU193614 other upstream 538267 6692066 ~ 6696204 (+) True ppp1r11
TU193952 other downstream 193398 7451050 ~ 7454742 (+) True LOC122323847
XR_006247093.1 other downstream 333867 7591519 ~ 7604620 (+) False ldlrap1a
TU193961 other downstream 351288 7608940 ~ 7615288 (+) True G131351
TU194014 other downstream 527127 7784779 ~ 7786335 (+) False si:ch73-130a3.4
TU194022 other downstream 527127 7784779 ~ 7786420 (+) False si:ch73-130a3.4

Expression Profile