RNA id: TU193857


Basic Information

Item Value
RNA id TU193857
length 2434
lncRNA type read_through
GC content 0.42
exon number 2
gene id G131296
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 7206189 ~ 7254556 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCTTtaacatttctcacattatgaAAGTTTATTTTCAACAGTTTAGAAGATATGACAAGAGCTCAGAATTAAACTGTCAGCATGAATTAATCTTGATAATATCAGATAACTTTGGTAGAAAGGTATGTAACAGATTACAGTCAACCTAAAATGATTCAGACAACTGTTAGTATGAGATTAAGATGTTCCATCACCTCCCAGATATGCTCAGTCGGGGTTAGATCTGGACTTTGCGGTGGCCAGAGcttttttgcattgtgtttGGTTCCATTATCATGCTAAAATATGAAACGACGGCCCATGAGCTTCCTGGCTGACGGCAGCATCTGACTCTGGAGAACTTCCACTCACAGTTCATAGTTCCATCAATGAAATGTAGTTTGCCTAGTCCACTAGCTGCCCTACACCCCCACAGCATAACATTGCCCCCTCCATTATTTACAGTAGGAGTAAGACACTGGGGCTTCAAGGCTTCTCCTTTGGTCCTCCACACATTTACTCTCATCACTCCAAAGGACTGACTTCCGAAATTCTGTAGACTTATCGATATGTTCTTCAGCAAACTGGAGGAGGCGTCGTCTTTGATTTCGAGGGTGTCTTCTGGGGCATTCTTCTGGGGTCATTCAGCCTGTTGCGAATGGTTTGAGCACACAGTTCTGTGTCAGTGGCCTTTTTGACTTCAGCAGCAATTTTTTTAGCAGaaatctttctgtttttcttcgCTAACTGTTTAATAAGTCTGTCTGTTCTGGCTGtcgtctttttctttcttccacgGCCAGGCAAATTCTTCACCTCGCCAGTCTCTCTGAATTTCTTTACAATGGAAAAGACCGTCCCTTTAGGCATATCTAATCTTTTAGCTATATTTCTAATTGAAAAGCCCTGCTTGTTGAATTTAACTACCTTTATTCTCAAATCAGTTGATCTTTCATTGGTTTTAGCCATCCTTGTGTTAGACTGTGTCGAAAATAAATTGGTTGACCTACATAAGTTAGGTATTTCTTGGTCCCAAATCcacaataaaacactttttaggCATAATAAGTCacagtttgctttattttgctaTCTTCACTTATTGTCCTGCACCCACTATACTGTATGTCTGgtgtctgaataatttttggtttgactgtatGCTACTTGGAGAGACATTATGAATTTATGCCTTCACATACTTCTCcatggacagaaaaaaaacaaaggtttcCTTTCTCCGTCCAAAACCCTGTCTTCCCCCATGACTTGTGGCACACTGGAGCAGGATTTTCTTACtgaaacaaagaagaaaaatgcttgaatatgaaaaatgcaGTCTGTCGTCCCATGTGCTGTAGCCTCTAGTaccatttttaaacaacaataataaacaaatgtctTGGATATGGTATGCAGCAATACATCACTCAGACAGTAATTGAACACGCTATGTATTACTTACATGTAAGTTAACAACACGGGGTGTAGTTCGGTGGGTGTcagtatgtgtttatatgcagAGTCATTACGGGTGACTTATGCGTTGCTTGTGCAAGCAGAACTCGTGttgtagaaaacattttgtCCTTCTCTCTGTTGATGGAGAGCAGGGAGGAAGTTTGGCCCTGAAGGTCCCTTCATTCTGCTCCAGTAGCGCTGCATGGGCTTCATGTACTGAGTGGTAAGATCAAGCAGAAGAGACTGCTTTTGAGTTAGGTTTGATCGTGGATCACCTCTGGGCAGATCAACACATAAACAACAACCAGTGAGAAAGGCCCCGCACTTCGACTGCAGCAtcgctctttctcttttccacTGGTTAGGTAGCTCTCCCAGTCTCTAGTATTGCGGGGTTTGTATAAATACTCAAAGTGTGAAAGAGAAGTGACATTTTCAAAGCGAACAGGTGCCGATCGTGGCCTTTCATCGCTTGTCTGTTCTCGGGAAGCTTTGAAGGCTTTCAGATTTATTGACTTTGCTCTCCGTCCCGGTTTGTACATGTTGTTCTTACGGTTTTGGAGTTTTTCCATCAGTCTGGTGTAGTGTTTATTCGTGCGCTGCAGGCCACCGGTGGAACACAATAACACGCAGCGCATCCTAGCGTGGGAGCAGCCAGTAACTGTTAGGCTAGACGACTGACTAATACCTACGTCTCATTATGGACTTGTTGTGTAAGCCGTGCAACGTGGTGCGAGGTCGTCCGAGAGCTCGGTCATGCGCTTCCATCCGCAAACATGGGCACTCAACTGACCCCGCGGAGAATATTTAATGCTTGTAAGAATAGCAGTGTGCTGATATGGATAAAAACGAGGCGGTCCAGTTGATTTTGAGGGTAAGGAAGAATTCGACTGTCCTCAGTTAAAGGGCAAGAGTTGGAACATGAACAtacttgtgaaaaagaagtgcattTTAGTATACCTATTATGGATTTAATCGGtggtAGTGCTGATA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193811 lncRNA downstream 161227 7043507 ~ 7044962 (-) True G131265
XR_006247094.1 lncRNA downstream 320746 6883962 ~ 6885443 (-) True LOC122324041
TU193728 lncRNA downstream 354061 6850369 ~ 6852128 (-) False srd5a1
TU193683 lncRNA downstream 445741 6760174 ~ 6760448 (-) True G131166
TU193682 lncRNA downstream 450754 6754414 ~ 6755435 (-) True G131165
TU193873 lncRNA upstream 5739 7260295 ~ 7262610 (-) True G131305
TU193896 lncRNA upstream 99588 7354144 ~ 7355469 (-) False G131318
TU193897 lncRNA upstream 99588 7354144 ~ 7355700 (-) True G131318
TU193978 lncRNA upstream 196437 7450993 ~ 7451916 (-) False LOC122323248
TU193980 lncRNA upstream 313392 7567948 ~ 7590147 (-) True G131363
XM_043218063.1 mRNA downstream 125439 7074386 ~ 7080750 (-) False nrsn1l
XM_043218061.1 mRNA downstream 126317 7074386 ~ 7079872 (-) False nrsn1l
XM_043216939.1 mRNA downstream 162843 7042113 ~ 7043346 (-) True ndufs6
XM_043217245.1 mRNA downstream 224763 6977815 ~ 6981426 (-) True irx1b
XM_043217669.1 mRNA downstream 306384 6889271 ~ 6899805 (-) True ube2ql1
XM_043218005.1 mRNA upstream 102994 7357550 ~ 7360143 (-) False LOC122323893
XM_043218410.1 mRNA upstream 141880 7396436 ~ 7397924 (-) False LOC122324169
XM_043216941.1 mRNA upstream 191202 7445758 ~ 7451096 (-) True LOC122323248
XM_043216942.1 mRNA upstream 313987 7568543 ~ 7575504 (-) True e2f3
XM_043216940.1 mRNA upstream 321624 7576180 ~ 7581234 (-) True LOC122323247
XR_006247131.1 other downstream 502252 6703871 ~ 6703937 (-) True LOC122324261
XR_006247130.1 other downstream 502800 6703323 ~ 6703389 (-) True LOC122324260
TU193649 other downstream 556800 6648438 ~ 6649389 (-) True polr1h
TU193577 other downstream 566969 6631189 ~ 6639220 (-) False sh3bp5lb
TU193406 other downstream 843017 6362347 ~ 6363172 (-) True G131006
TU193894 other upstream 102065 7356621 ~ 7360111 (-) True LOC122323893
TU193918 other upstream 140624 7395180 ~ 7397946 (-) True LOC122324169
TU193992 other upstream 347577 7602133 ~ 7605143 (-) True G131373
XR_006247052.1 other upstream 864393 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other upstream 866956 8121512 ~ 8129258 (-) False khdrbs1b

Expression Profile