RNA id: TU193894


Basic Information

Item Value
RNA id TU193894
length 2038
RNA type TUCP
GC content 0.46
exon number 3
gene id LOC122323893
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 7356621 ~ 7360143 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGGAGCGATCAGACTGGTGCAAATTCATCTCATGCATTCATCTCTGATTCATATAGCGTCTAGCTCGACGTCCCGACACGCCGACCGAGAGCTGCAGCCGCCGCGCTTTAATATCCTTTGAACTGAGAGCGGACTCTCATTAAAGACGACCGAGCGCCGCTGGGAAGGTTTATTGGGGTTTGATCAGCGCTATGGCGGAGGTGCCAGGTACATCGAGTGAGACGATAACGGAGACCGTTCAGACGGGCACGCCGCCTCCACCCCAGCAGGAGGGCAGAAGCCTGACCATCAAGCTCAGGAAAAGGAAGACGGAGAAGAAAGTGGAGTGGTCCAGTGACACGGTGGACAACGAGCATCTGGGCCGGAGGTCTTCAAAGTGCTGCTGTGTTTATGAGAAGCCTCGACAGTTCGGCGAGTCTTCCTCGGAAAGCGAGGGGGACGACGAGGAGGGCTGCGGAAGCGCGCACTGCATTCTGGGACATGGGAGAAGAGGCCACGGACAGAGGGAGGGTGGAGGGAGCACGACGCCCCCTAGCTCCGGGGGAAAGAACCCTCACTAGAGCTTGACACGAGCGGGAGGGAAGGGTAACGGACGGCGTGGGCACTACATTCATAATCCCTCATCCTCACTCACATCCGATTACATCACGCCATCACTGGGTGTCAAAAGCTTTTTGATGAATGAAAGCTTGTAGAGCAATGCAACGTGATTCGTTTTCTCCTCGGTCATTTGCGTAATGACCCAAAAGAGGgataaaccctttttttttttttttgcgatctGAATGCTGCAGAAAATTGATGTTTGTTGTACATAGGACattggtttttatttcttttgtaaaatcgGTATTTATTCGTCTCGCGTTTAACAACTTGATCTTAGTTTCGTGTTCACGAGCAACGTTTTAACggatttaaaatatgattcagCAGGGTTAGAGCTTCTAGTTCGGATTTGAAAGGAATGAATGCAGTATAATAAaaggatttattttctttttaatcaaacatgGTTTGCCTTGCGGTGTCACAATTCTAGCAGCAGTATTTCTTCATATCACTCGATCGTTCGAGGAACTTCAAACGTAACGTGTGTCGTGTGCTATAGTGNtttttttttttttttttttgacaaggGCGCATTAAAATCATTTCCATCAGCCGTCGTAAGTTTGCGTTCTAGTGAGACTCCCCTCAGACAATCAGACTAGTCAGAGACTCGGCGTGTACGTGCGGAGACATTGATGTGTTTATGACTTAGTGAAGTGGACTGAGAAACATCTGCGGTGCTGTACTTCCTTCTGAATGCCAACTGAGAGGCTGGATCATTGCTCAAAACCTGACCGAAATTAAACGGCAGCggtcaaatgaaagaaatagtTCAGCCGAATATGAACATATGCGGCTTTTCTACTCGGGTCATCGAGATGGAAATGAATTGGTTTGTTCACGGGAACAGATTTGATGAAATGTACGCGTTGCGTCATTTTCTCAGCAGTGTATcgtcttcagtgaatgggtgccgtctgaatgagagtccaaacagctgatgaaaacattacagtaacCCACTCGGCTACGgaccatcagttaacatcttgtgaagtgaaaagctaaTCCATCGAGACTCCTAACGACTAAAACATGACATCCATAATGCTGCTTTCTCCAGTGGAAGTCATCCTgactgaatcaggagagaaataagCACAGATCCGGCACTGTTTAGAGGCAAAAACGgctcaaaatgaataatttcttAGGATTGTAGGATAGTATATTGGTTAGAAGTGacggtttaaagttaaaacactaACTAATGGAGCATGCACGGCTTATttcttcacaagacattaactaatagaccggagtgctgtggattattgcgatgcttttttcagctctttctgacggcacccattcactgcagaggatccgccGATGAGCAAGAGATGCAATGCTAcacaagaaacaaactcatctaaaacttgggtgaactattctatAAAGCAGTGGGATTGATCTGAAAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193897 lncRNA downstream 921 7354144 ~ 7355700 (-) True G131318
TU193896 lncRNA downstream 1152 7354144 ~ 7355469 (-) False G131318
TU193873 lncRNA downstream 94011 7260295 ~ 7262610 (-) True G131305
TU193857 lncRNA downstream 102065 7206189 ~ 7254556 (-) True G131296
TU193811 lncRNA downstream 311659 7043507 ~ 7044962 (-) True G131265
TU193978 lncRNA upstream 90882 7450993 ~ 7451916 (-) False LOC122323248
TU193980 lncRNA upstream 207837 7567948 ~ 7590147 (-) True G131363
TU194062 lncRNA upstream 589678 7949789 ~ 7950001 (-) True G131411
TU194064 lncRNA upstream 627409 7987520 ~ 7988325 (-) True G131413
XR_006247019.1 lncRNA upstream 635976 7996087 ~ 7997257 (-) True LOC122323519
XM_043217946.1 mRNA downstream 117938 7234807 ~ 7238683 (-) True sox4a
XM_043218062.1 mRNA downstream 124494 7074386 ~ 7232127 (-) True nrsn1l
XM_043218063.1 mRNA downstream 275871 7074386 ~ 7080750 (-) False nrsn1l
XM_043218061.1 mRNA downstream 276749 7074386 ~ 7079872 (-) False nrsn1l
XM_043216939.1 mRNA downstream 313275 7042113 ~ 7043346 (-) True ndufs6
XM_043218410.1 mRNA upstream 36325 7396436 ~ 7397924 (-) False LOC122324169
XM_043216941.1 mRNA upstream 85647 7445758 ~ 7451096 (-) True LOC122323248
XM_043216942.1 mRNA upstream 208432 7568543 ~ 7575504 (-) True e2f3
XM_043216940.1 mRNA upstream 216069 7576180 ~ 7581234 (-) True LOC122323247
XM_043218381.1 mRNA upstream 251876 7611987 ~ 7630756 (-) False fndc5b
XR_006247131.1 other downstream 652684 6703871 ~ 6703937 (-) True LOC122324261
XR_006247130.1 other downstream 653232 6703323 ~ 6703389 (-) True LOC122324260
TU193649 other downstream 707232 6648438 ~ 6649389 (-) True polr1h
TU193577 other downstream 717401 6631189 ~ 6639220 (-) False sh3bp5lb
TU193406 other downstream 993449 6362347 ~ 6363172 (-) True G131006
TU193918 other upstream 35069 7395180 ~ 7397946 (-) True LOC122324169
TU193992 other upstream 242022 7602133 ~ 7605143 (-) True G131373
XR_006247052.1 other upstream 758838 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other upstream 761401 8121512 ~ 8129258 (-) False khdrbs1b
TU194205 other upstream 927183 8287294 ~ 8320885 (-) False trit1

Expression Profile