RNA id: TU193896


Basic Information

Item Value
RNA id TU193896
length 1326
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G131318
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 7354144 ~ 7355700 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATACATACTCCAGACAGAACGTATGGGAAAAGAaagtttattttagctgtaaGGATTATTAAAGACTCGGTGTGCAGCACTTAAGAACTGCAGATGTAGATCTCGCACCCTAGATACATCCACCCTTGAGCTGCAATGCATTTCACTCTACAGCAGACATTTCTATTCACAGCTGGCttacaaaaatggaaaaacacttttcaaagACCCTTCAAAGGTTGCACGTCTTCTTGCATTGCTCGAGGTCGTCGTGATCCAACAATTCTAGCGCtacattttaatgcttaaataaCTGACACGACCAACCTAGAAAGTTATAAACCAGTACCATAAAGTTAAAGTCACTCACAGATATTTCATTGTTCTATAATATCATGCATAGATAAAAACGCTATCTGTGGAACACATTCAGGAAGAGAAAGCTATTCTTGCAAGCGAGAGACACGTTTGTGCAACAGAGCATTGGATAATAAGCTGTCAGTACGCAACTGTGCAAATTACTACTAATTTCTTTACCCATAATTCCCTGTGAACTGGCCGAAGTGCCAGATATTGTGAGGCACGACAGATATAATCAACTGAAATCTAGATGAAGACTGAcaacgcataaaaaaaaaaataatagtaatcaaGACATGCAGTTAATGTTGTAAAgaagcatatttaaatatacgtCAAACACGGAGTGGTTCTAATGACATAACCCAAAATATAAGCAAGTCGGATTTTTATGAACAGGatcaatgaatgaaaaataagtatgaggcaacaaaaaaaaaaggtcatttgcATCCAGTTCCTTTATAATGCACTCAAAAAGTTCCCCAAGATTGCCTGCGACTGGACTAATGGGCCGAATTAAGGATGGGTGACTCGAGCCGTTAGACATCGCTGATGAGAACAATCCAGAGACGCTGTTAGAGGCCACACCGAGCTACTAATAAAGTGACACATGCAGATGTGCAGAACACACAGTGCGGAGGGGAGAAGCTGTTGAATCCCATATAAAGGTAAAAGTGAATTTCCCTGACAATCAATCACTGCTGGTTCCTCGGTTCTGTACATGGTTCTTCGGGTTTGCAGACAGTTTTATCGCTGCGGCTGTGTATTCTAGTGTTTTGCTCATCTACCTCTCCTGCTGGTGTGCTACGTCAACATCGGTTTTGGGAACGTTAAAAGTACGTTTTGAAGCGAGCGAAAACTTGCAGTGGTGGAGAGAAGAAGAGGTGCTGGTACGTTCAGGGTGCTCTTCGATCGCTCGTGGGGAGTCGTGTTGAAGTGGTTAAATCCTCTGTGAAAGATTTCGGGGCTGGACTATCGGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193873 lncRNA downstream 91534 7260295 ~ 7262610 (-) True G131305
TU193857 lncRNA downstream 99588 7206189 ~ 7254556 (-) True G131296
TU193811 lncRNA downstream 309182 7043507 ~ 7044962 (-) True G131265
XR_006247094.1 lncRNA downstream 468701 6883962 ~ 6885443 (-) True LOC122324041
TU193728 lncRNA downstream 502016 6850369 ~ 6852128 (-) False srd5a1
TU193978 lncRNA upstream 95524 7450993 ~ 7451916 (-) False LOC122323248
TU193980 lncRNA upstream 212479 7567948 ~ 7590147 (-) True G131363
TU194062 lncRNA upstream 594320 7949789 ~ 7950001 (-) True G131411
TU194064 lncRNA upstream 632051 7987520 ~ 7988325 (-) True G131413
XR_006247019.1 lncRNA upstream 640618 7996087 ~ 7997257 (-) True LOC122323519
XM_043217946.1 mRNA downstream 115461 7234807 ~ 7238683 (-) True sox4a
XM_043218062.1 mRNA downstream 122017 7074386 ~ 7232127 (-) True nrsn1l
XM_043218063.1 mRNA downstream 273394 7074386 ~ 7080750 (-) False nrsn1l
XM_043218061.1 mRNA downstream 274272 7074386 ~ 7079872 (-) False nrsn1l
XM_043216939.1 mRNA downstream 310798 7042113 ~ 7043346 (-) True ndufs6
XM_043218005.1 mRNA upstream 2081 7357550 ~ 7360143 (-) False LOC122323893
XM_043218410.1 mRNA upstream 40967 7396436 ~ 7397924 (-) False LOC122324169
XM_043216941.1 mRNA upstream 90289 7445758 ~ 7451096 (-) True LOC122323248
XM_043216942.1 mRNA upstream 213074 7568543 ~ 7575504 (-) True e2f3
XM_043216940.1 mRNA upstream 220711 7576180 ~ 7581234 (-) True LOC122323247
XR_006247131.1 other downstream 650207 6703871 ~ 6703937 (-) True LOC122324261
XR_006247130.1 other downstream 650755 6703323 ~ 6703389 (-) True LOC122324260
TU193649 other downstream 704755 6648438 ~ 6649389 (-) True polr1h
TU193577 other downstream 714924 6631189 ~ 6639220 (-) False sh3bp5lb
TU193406 other downstream 990972 6362347 ~ 6363172 (-) True G131006
TU193894 other upstream 1152 7356621 ~ 7360111 (-) True LOC122323893
TU193918 other upstream 39711 7395180 ~ 7397946 (-) True LOC122324169
TU193992 other upstream 246664 7602133 ~ 7605143 (-) True G131373
XR_006247052.1 other upstream 763480 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other upstream 766043 8121512 ~ 8129258 (-) False khdrbs1b

Expression Profile