RNA id: TU193980


Basic Information

Item Value
RNA id TU193980
length 1379
lncRNA type read_through
GC content 0.35
exon number 2
gene id G131363
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 7567948 ~ 7590147 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGGCGTGTTCTTTACTCTCCACAAAGTTTACCATAAAAACACCAAATGCAATCCACAGTAATACTTTCCCAAggtagacaaataaaaaaagaaagcccCGTTGTAAAACAAGGACCAAACCAAACAAGCATATTCTGCCTGCATCATGACACAAACCACTGAAGAAGAAATGTGAAGGACTCCAGTCATGAAGCGTTAATGGATTGATTTTCAGGTGTCCCCCCCAGTCACTGAAGTCTCTATGAAATGACGCATAGTTTGCATTATCTTCAATGACATCAAAATGGCGGAAGGGAGGAAAAATTGGCACGTTTtaccaaaaccaaaacattcagcaagtattataaaaaatgcaatgttaatgtaaattagAGACATGACAGAAACAGCGACCATCGATAACTAGTGGATTAGAGTGGgcttgctttttttccccccctgaCAAAACACATGGCAACGAGAGGGCAGATGATTTCAAATGCCacgctggggaaaaaaacaaaacaaaaaaaaaaaaaaaacaggtcatGTGGTGTGCGGACCAATCAGATGGATTCTAGGGGTGGGCGATCATGGCATGTATTATATTGAACAGGATATTTCAAGGCACTGTGTAACATAACAACTGGCAAACAAGACATCATAAGTTCAGCTTTTCAACTGGTTTCAACTAAATTCTATTTCAATTTTGTCCGGTAACAAAAAGGACTTGCATTGACCGCAAAATACGACGACATTCCCGAATATTTATGCAGCATTTTTGTCAACAAATACAATGTGAACATCAGTCCCTTtttaaacacgtttttttttttttttttttttttttttttttttttttttttttgctcattcctataaattattttttttctccccactTCTGGAAAAGGCACATTACGTGCTTATACACAGGCCACTGAtctaaaacttttctttttcagtctttATTCCTGCAAATTAGACTGCCATTCTGTtgctttacttattttattttatttttttttaataaatattaaggaGAGTTCAATTGTTGAATACTTCAAATGTGAAGTAACTTGTTATTGCAGTTTTTGCTGTGGTTAAAGTAAATTATGGTACATAATTTTGAATTAGTGCTAATGCTCACTAGTTCTTGATTCTGCGTTGAAATGAGGGATGGTCATGTATGCAGCCATATTGCATAGAAAGTTATGATTAATCACCAGTATCTATTCTATTCTACGGTGCAGTTTGATTTACCccaatgtagatttttttttttttttttaaacaattaagaGGCAGTTTTGTGTGCCaatgtgtgtgaaaatgtgaaGTTTTATATGTGGATTGTAAACTGCGCATCAATTGTTtgcaaattgtttttaataaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193978 lncRNA downstream 116032 7450993 ~ 7451916 (-) False LOC122323248
TU193897 lncRNA downstream 212248 7354144 ~ 7355700 (-) True G131318
TU193896 lncRNA downstream 212479 7354144 ~ 7355469 (-) False G131318
TU193873 lncRNA downstream 305338 7260295 ~ 7262610 (-) True G131305
TU193857 lncRNA downstream 313392 7206189 ~ 7254556 (-) True G131296
TU194062 lncRNA upstream 359642 7949789 ~ 7950001 (-) True G131411
TU194064 lncRNA upstream 397373 7987520 ~ 7988325 (-) True G131413
XR_006247019.1 lncRNA upstream 405940 7996087 ~ 7997257 (-) True LOC122323519
TU194130 lncRNA upstream 405945 7996092 ~ 7996394 (-) False LOC122323519
XR_006247114.1 lncRNA upstream 456129 8046276 ~ 8046879 (-) True LOC122324217
XM_043216941.1 mRNA downstream 116852 7445758 ~ 7451096 (-) True LOC122323248
XM_043218410.1 mRNA downstream 170024 7396436 ~ 7397924 (-) False LOC122324169
XM_043218005.1 mRNA downstream 207805 7357550 ~ 7360143 (-) False LOC122323893
XM_043217946.1 mRNA downstream 329265 7234807 ~ 7238683 (-) True sox4a
XM_043218063.1 mRNA downstream 487198 7074386 ~ 7080750 (-) False nrsn1l
XM_043218381.1 mRNA upstream 21840 7611987 ~ 7630756 (-) False fndc5b
XM_043218380.1 mRNA upstream 21840 7611987 ~ 7630755 (-) True fndc5b
XM_043217931.1 mRNA upstream 183818 7773965 ~ 7777114 (-) True eif3i
XM_043218017.1 mRNA upstream 187326 7777473 ~ 7784225 (-) False txlna
XM_043218018.1 mRNA upstream 187326 7777473 ~ 7784194 (-) True txlna
TU193918 other downstream 170002 7395180 ~ 7397946 (-) True LOC122324169
TU193894 other downstream 207837 7356621 ~ 7360111 (-) True LOC122323893
XR_006247131.1 other downstream 864011 6703871 ~ 6703937 (-) True LOC122324261
XR_006247130.1 other downstream 864559 6703323 ~ 6703389 (-) True LOC122324260
TU193649 other downstream 918559 6648438 ~ 6649389 (-) True polr1h
TU193992 other upstream 11986 7602133 ~ 7605143 (-) True G131373
XR_006247052.1 other upstream 528802 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other upstream 531365 8121512 ~ 8129258 (-) False khdrbs1b
TU194205 other upstream 697147 8287294 ~ 8320885 (-) False trit1
XR_006247071.1 other upstream 699441 8289588 ~ 8320901 (-) False trit1

Expression Profile