RNA id: TU194151


Basic Information

Item Value
RNA id TU194151
length 419
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G131464
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8175383 ~ 8176840 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACATAAATTCCAGCAGCGTTTCGTCATGGGTTGCCTGCCGCCATGGTTCCTCACACACCCCACCCAAAGAGAGACGCCCCCTCTGCACACAGCCATTCAGGTCAGGGTGCTGAGGTGACCTCGAGGGAGTCTCAGTGGGACGACATCCTCAAGCTACTCAGAGGAACGTGAACGTGAAGTCTCCCATCCACCGCTGCCTCGGATCACTCACTCATACACAGAGAAACGGCTGTCCCTCAAAACCTGTCCTGACTGAATCCGACGCGGCGCTGCGGAGCGTCAGCTCACTGTGCAGAGACGCGGGAGTGACTCCAGATCTGACTCACGACCGTTTCTGTCCGATTTAGAAAGAATACGAATCTTTTGTCAACGTTACACAAATGTCACTCTCCTTATGTCCTTGCCCAGGACCAGTCC

Function

GO:

id name namespace
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0016875 ligase activity, forming carbon-oxygen bonds molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006246989.1 lncRNA downstream 31188 8142931 ~ 8144195 (-) True LOC122323284
XR_006247118.1 lncRNA downstream 91487 8078100 ~ 8083896 (-) True LOC122324233
XR_006247114.1 lncRNA downstream 128504 8046276 ~ 8046879 (-) True LOC122324217
XR_006247019.1 lncRNA downstream 178126 7996087 ~ 7997257 (-) True LOC122323519
TU194130 lncRNA downstream 178989 7996092 ~ 7996394 (-) False LOC122323519
TU194202 lncRNA upstream 47979 8224819 ~ 8272803 (-) True G131495
TU194216 lncRNA upstream 71981 8248821 ~ 8249227 (-) True G131501
TU194221 lncRNA upstream 103154 8279994 ~ 8280260 (-) True G131506
TU194222 lncRNA upstream 105761 8282601 ~ 8282824 (-) True G131507
TU194223 lncRNA upstream 106258 8283098 ~ 8283441 (-) True G131508
XM_043218400.1 mRNA downstream 911 8164868 ~ 8174472 (-) False abcf1
XM_043218399.1 mRNA downstream 911 8164868 ~ 8174472 (-) True abcf1
XM_043218401.1 mRNA downstream 13220 8150959 ~ 8162163 (-) False ppp1r10
XM_043218402.1 mRNA downstream 13220 8150959 ~ 8162163 (-) True ppp1r10
XM_043217224.1 mRNA downstream 27898 8145636 ~ 8147485 (-) True agr2
XM_043217579.1 mRNA upstream 5180 8182020 ~ 8195819 (-) False bag6l
XM_043217582.1 mRNA upstream 5180 8182020 ~ 8195781 (-) False bag6l
XM_043217583.1 mRNA upstream 5180 8182020 ~ 8195780 (-) False bag6l
XM_043217581.1 mRNA upstream 5180 8182020 ~ 8195780 (-) False bag6l
XM_043217580.1 mRNA upstream 5180 8182020 ~ 8195456 (-) True bag6l
XR_006247052.1 other downstream 46113 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other downstream 46125 8121512 ~ 8129258 (-) False khdrbs1b
TU193992 other downstream 570240 7602133 ~ 7605143 (-) True G131373
TU193918 other downstream 777437 7395180 ~ 7397946 (-) True LOC122324169
TU193894 other downstream 815272 7356621 ~ 7360111 (-) True LOC122323893
TU194205 other upstream 110454 8287294 ~ 8320885 (-) False trit1
XR_006247071.1 other upstream 112748 8289588 ~ 8320901 (-) False trit1
XR_006247069.1 other upstream 550419 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247085.1 other upstream 574529 8751369 ~ 8757673 (-) False hey1
TU194713 other upstream 1131880 9308720 ~ 9309352 (-) True G131861

Expression Profile