RNA id: XM_043218008.1


Basic Information

Item Value
RNA id XM_043218008.1
length 3245
RNA type mRNA
GC content 0.43
exon number 9
gene id trit1
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8287145 ~ 8320901 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCACAGCCCTGAGAGGCTTCTGTCATGGCGGCCGCCACGCGTGTGCTCCAGAAAGCCGTCAGCCCGTCTTTAGTGGTGGTTTTAGGAGCGACGGGAACGGGCAAATCCAAACTGGCCATCGAGATCGGGAAAAGGCTTAACGGGGAAATTATAAGCGCCGATTCCATGCAGGTTTACAAAGGGCTGGACATCATCACCAATAAGGTTACAGAGGAGGAGCAAGCCCAGTGTCGCCATCACATGATCAATTTTTTGGATCCATTGGTTAGTGGATACACCGTGGTGGACTTCAGGAACAAGGCTCTGTCGCTCATAGAGGATATGCATCGACGGAAAAAACTTCCCATCATTGTTGGAGGCACGAACTACTACATTGAGTCCATTTTATGGAACGTGCTCCTCGTCACTGGGCAGGGGAGTGACACGGAGTCAGAAAAGGGCGTGGCCTTTGAATCAAAGACGGAGCTCGAGAAACTGGGTGCTCTTGAACTTCACAGACGGTTGAAGGAGGTGGATCCTGACATGGCAGCCATATTGCACCCTCATGATGCACGCAAGCTTGCAAGTCAGGACTATCAGCATGGCATCTTCCAGTCTATTGGCTTTAAAGAGTTTCACGACTACCTGACAGCAAGTGAAGACATCAGCCAGGAAGAACGTAATAAACTGAAGATTAAAGGGATCGAGGCTCTCAAACAGGTGACCCGCCGCTACGCCCGAAAACAGAACAAATGGGTCCGCAACCGATTCCTCAAAAGACCTGCTAGCAATGTGCCACCGATTTACGGTCTGGATGTGACAGATGTGACCAATTGGGAGACTACTGTACTTACTCCAGCTCTAGAGATCCTGGACTGCCTCCAAAAGGGAGTGCAGCCGCCtgcacagccaatcagagcagagggGGAGGAGCCTCGCAACAAGAGGAGTCACCACGTGTGCGATTTGTGCGATAAGGTGGTCATTGGCGACTTGGAATGGAATGCACACCAGAAGTCCAAAAACCATCTTTATCAAGTCCGCAAGAGGAGAAAAGCAGAGCAAACCTCAGATCAGGACCCAAAGCCTACCGAACATCCAAAAGTCAGTGACGGGCAGGTACCTGCGCTATAGGTCTGTTTGGGGTCGAGCTCACAGATGGACCAAATCAATCAAGTGccaataatgtatattttagatgAACACAAGTAGGTACTTTCAGAGTGATTGATTTGCATAGGGCAGCAGTGAACTCTCTCCCTGTGGAGCAACAGAATGCACTTCAGggtctgtgatttttttttttttttttttttttggacaccaggatttgaatgtttttttaccCATCTGCCACAGAACAAGGGGTATGGCTAATGTCTGGATTTGGATTCTTGCGCTGGACAGATGTCTTCCCTGCTGCTGTTTTGTCTTAAGCGGTCACTTTTTAACCACATCTAACCGCGTCTACTGCTCTTTTAAACCACGCTGCGGTGAGCTGCGCTAACCTCTGGCTGCTCTGACTGAACTCAAAATACATTACTGCTGATGTTGGATTACTGGATCACATTTTTCTCGGCTGATCAAGAAAGGAaggttatttttttgcatattaaaactgATGCCGGACTTTATTTGGAGGTTTTACACTTACGTAATCGTCTGATCAGTTTGCGTCAGAACATATGTGACTTCGATCAGATGTGGACGTTCTTTCCTCAGGATTCCCAGTGCCTTTGACTTTGACGTccaaaagcttattttatttactctcTTGCCATTCATTCTtccgtggaacacaaaagaagagattttgaaaaatgtatgtccataattataaaaaaattataatgtggGAAGACTTGACACACAAATGTTATTGGCTACTTTACAGGGGTTTTGGCCCATTGGAGCTTgtgtggaaaagagcagcatgaacattcttcatttttttgacttgatgctttacattttaaaactcaactgcatttgatttttagttggtgttttttatttcttgactttttactgcatatattatgtaaatgtaattaaagagttttttataatttttatagtgATTTATACGAACAGTTCTGCTTATCTAATCAACTGAGTCAGAAAAACTTTTAGCATGAAGTCATCAGGGTTGCTTGGGCAGTGAGCCATCAATACCTGCTCATACCGGCTCACAACTTCGTAATCCCTGGCTGAGAGCCACAAGCTACCTCATTTTTCGTTCTCCCTCTCTTTTGATCCCTGCTCTGCATCGATGTATGTGCTTCTAGTGTGGTCCACAGCATGACACTCATTAGCCTCACTGTACAGGCTAAATATACATCACACATACAATAGCTGGAAGGGAGAGTGTTTACATAGAGGGCACGAAAGTGGCTGTCCCATATTTACACTGATGTGGGTCACTGATTTGAGCTGTGCGGGTGCCGGTGATTCCGGTATAAGGGGTGACGGGCACCCTCTCCTTCttgtgagttttattttagctccGCGAGAGCCCAAGGCTTGGCGGGAAAGTCTTAATGGGTCAGCGGAGCTTCCTCTTGAAGGACAACGGCTCATTTAGATCAGGGAGTTCTCAAGGATGGAAGTGAATGGAAAGAAGAACAAAGGCAAACGGCAATCAGCTGGCGTTTGGTGACCCAGCGTGTTGCCTGTGTTTTGAAGAACTACGTGCTTGTCGCTCATTTTCGTGCGTTGACGCTAAATTAGAGAACCAAGACTTTCGGTCTTCAATCAAGAATATAAAAACTTCAGAAAGTCTGTTTGATTCAGTGCTTATGCTACAGTCACTTTGTGTCCGAAACGATCAATTACGTGAAGTTTAATTGCCTGTAAAGGGACAGCCGAAGTCATAGGTGACCTCTGATCTTAACTGGCTCTTGgggtcgctggggtatatttatagcaatagccaaaaatacataaatgttgaaatagatttttcatttatgccaaaaatcattaggagattaagtaaagatcatgttttatgaagatgctttgtacatttcctactgttAATATATCCAAACATGCGATTAGTAAAATGCATAGCTATAAACATCACCACTTCGACcactttaaaggtgtttttctcagtattttagatttttttttttttttttttttttttgcacccagATTACAGGCATTCAAACAGTTGTCCTAAGAAATCATATATATGTGGAAAGTTGATTTATTCAACtttcagattaataaatattttaaaaaaatcaacccttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194223 lncRNA downstream 3704 8283098 ~ 8283441 (-) True G131508
TU194222 lncRNA downstream 4321 8282601 ~ 8282824 (-) True G131507
TU194221 lncRNA downstream 6885 8279994 ~ 8280260 (-) True G131506
TU194202 lncRNA downstream 14342 8224819 ~ 8272803 (-) True G131495
TU194216 lncRNA downstream 37918 8248821 ~ 8249227 (-) True G131501
TU194226 lncRNA upstream 32632 8353533 ~ 8355117 (-) True G131511
TU194405 lncRNA upstream 220323 8541224 ~ 8555592 (-) False G131654
TU194404 lncRNA upstream 231060 8551961 ~ 8555592 (-) True G131654
TU194433 lncRNA upstream 318527 8639428 ~ 8639657 (-) True G131675
TU194432 lncRNA upstream 337258 8658159 ~ 8659014 (-) False tdp2b
XM_043218467.1 mRNA downstream 71162 8197711 ~ 8215983 (-) True hpcal4
XM_043217579.1 mRNA downstream 91326 8182020 ~ 8195819 (-) False bag6l
XM_043217582.1 mRNA downstream 91364 8182020 ~ 8195781 (-) False bag6l
XM_043217583.1 mRNA downstream 91365 8182020 ~ 8195780 (-) False bag6l
XM_043217581.1 mRNA downstream 91365 8182020 ~ 8195780 (-) False bag6l
XM_043218206.1 mRNA upstream 1748 8322649 ~ 8326971 (-) True myclb
XM_043217432.1 mRNA upstream 55307 8376208 ~ 8412833 (-) False kiaa1522
XM_043217431.1 mRNA upstream 55307 8376208 ~ 8412832 (-) True kiaa1522
XM_043217430.1 mRNA upstream 55307 8376208 ~ 8412831 (-) False kiaa1522
XM_043217434.1 mRNA upstream 55307 8376208 ~ 8399584 (-) False kiaa1522
XR_006247052.1 other downstream 157875 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other downstream 157887 8121512 ~ 8129258 (-) False khdrbs1b
TU193992 other downstream 682002 7602133 ~ 7605143 (-) True G131373
TU193918 other downstream 889199 7395180 ~ 7397946 (-) True LOC122324169
TU193894 other downstream 927034 7356621 ~ 7360111 (-) True LOC122323893
XR_006247069.1 other upstream 406358 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247085.1 other upstream 430468 8751369 ~ 8757673 (-) False hey1
TU194713 other upstream 987819 9308720 ~ 9309352 (-) True G131861
XR_006246990.1 other upstream 1338994 9659895 ~ 9664459 (-) True cibar1
TU195128 other upstream 1987057 10307958 ~ 10311928 (-) False elp2

Expression Profile