RNA id: XR_006247071.1


Basic Information

Item Value
RNA id XR_006247071.1
length 1167
RNA type transcript
GC content 0.51
exon number 11
gene id trit1
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8287145 ~ 8320901 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCACAGCCCTGAGAGGCTTCTGTCATGGCGGCCGCCACGCGTGTGCTCCAGAAAGCCGTCAGCCCGTCTTTAGTGGTGGTTTTAGGAGCGACGGGAACGGGCAAATCCAAACTGGCCATCGAGATCGGGAAAAGGCTTAACGGGGAAATTATAAGCGCCGATTCCATGCAGGTTTACAAAGGGCTGGACATCATCACCAATAAGGTTACAGAGGAGGAGCAAGCCCAGTGTCGCCATCACATGATCAATTTTTTGGATCCATTGGTTAGTGGATACACCGTGGTGGACTTCAGGAACAAGGCTCTGTCGCTCATAGAGGATATGCATCGACGGAAAAAACTTCCCATCATTGTTGGAGGCACGAACTACTACATTGAGTCCATTTTATGGAACGTGCTCCTCGTCACTGGGCAGGGGAGTGACACGGAGTCAGAAAAGGGCGTGGCCTTTGAATCAAAGACGGAGCTCGAGAAACTGGGTGCTCTTGAACTTCACAGACGGTTGAAGGAGGTGGATCCTGACATGGCAGCCATATTGCACCCTCATGATGCACGCAAGCTTGCAAGGAGTCTGCAGGTGTTCATGGACACTGGGGTTCCACACAGTCAGCTTTTGGAGGAGCAGCGTGGACAGGATGGAGGAGATTGTCTTGGGGGGCCTTTGCGGTTCAAGGACCCTTGCATCTTCTGGCTGCATTGCAAAACAAATGCTCTAGATGAGCGGTTGGACAAGCGTGTGGATCAGATGTTGTCGCTTGGGGTGATTGAAGAGCTTAAAGATTTTCACCAACGCTTTAATGAGAGGAAGATCAAAGAGAACAGTCAGGACTATCAGCATGGCATCTTCCAGTCTATTGGCTTTAAAGAGTTTCACGACTACCTGACAGCAAGTGAAGACATCAGCCAGGAAGAACGTAATAAACTGAAGATTAAAGGGATCGAGGCTCTCAAACAGGTGACCCGCCGCTACGCCCGAAAACAGAACAAATGGGTCCGCAACCGATTCCTCAAAAtgctGGACTTGTGCAACATTCACCTCAGGACCTGCTAGCAATGTGCCACCGATTTACGGTCTGGATGTGACAGATGTGACCAATTGGGAGACTACTGTACTTACTCCAGCTCTAGAGATCCTGGACTGCCTCCAAAAGGGAGTGCAGCCGCCtg

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194223 lncRNA downstream 6147 8283098 ~ 8283441 (-) True G131508
TU194222 lncRNA downstream 6764 8282601 ~ 8282824 (-) True G131507
TU194221 lncRNA downstream 9328 8279994 ~ 8280260 (-) True G131506
TU194202 lncRNA downstream 16785 8224819 ~ 8272803 (-) True G131495
TU194226 lncRNA upstream 32632 8353533 ~ 8355117 (-) True G131511
TU194405 lncRNA upstream 220323 8541224 ~ 8555592 (-) False G131654
TU194404 lncRNA upstream 231060 8551961 ~ 8555592 (-) True G131654
TU194433 lncRNA upstream 318527 8639428 ~ 8639657 (-) True G131675
TU194432 lncRNA upstream 337258 8658159 ~ 8659014 (-) False tdp2b
XM_043218467.1 mRNA downstream 73605 8197711 ~ 8215983 (-) True hpcal4
XM_043217582.1 mRNA downstream 93807 8182020 ~ 8195781 (-) False bag6l
XM_043218206.1 mRNA upstream 1748 8322649 ~ 8326971 (-) True myclb
XM_043217432.1 mRNA upstream 55307 8376208 ~ 8412833 (-) False kiaa1522
XM_043217431.1 mRNA upstream 55307 8376208 ~ 8412832 (-) True kiaa1522
XM_043217430.1 mRNA upstream 55307 8376208 ~ 8412831 (-) False kiaa1522
XM_043217434.1 mRNA upstream 55307 8376208 ~ 8399584 (-) False kiaa1522
XR_006247052.1 other downstream 160318 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other downstream 160330 8121512 ~ 8129258 (-) False khdrbs1b
TU193992 other downstream 684445 7602133 ~ 7605143 (-) True G131373
TU193918 other downstream 891642 7395180 ~ 7397946 (-) True LOC122324169
TU193894 other downstream 929477 7356621 ~ 7360111 (-) True LOC122323893
XR_006247069.1 other upstream 406358 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247085.1 other upstream 430468 8751369 ~ 8757673 (-) False hey1
TU194713 other upstream 987819 9308720 ~ 9309352 (-) True G131861
XR_006246990.1 other upstream 1338994 9659895 ~ 9664459 (-) True cibar1
TU195128 other upstream 1987057 10307958 ~ 10311928 (-) False elp2

Expression Profile