RNA id: TU194404


Basic Information

Item Value
RNA id TU194404
length 3592
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G131654
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8541224 ~ 8555592 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTAAAACACAGCTGTCTTGCCCGAAGCCCCACAGAGTCGCTTGTTGTGTTTGGAGAGGATCTGGCACAGCCGGTTCTAGCACAAGAGCGTTTTCCCTGGGAACAATGAGGCTTTAACACAGCGAGAGAGGGGTCTGTGCACCAGCTGACCAGTTCAAACAGGAATCCTTTGCTGGATGTTGGTCGATTCAGCGTTCTGGATGACAGACGTAGATCACACGATACGGGCTTCAGAGATAATAGGTGGGATTGGCTTCTAATTAGGTCTCAAATCATGAAAAAGGCAAACATATCCTCCACAAAAGCCAAAGCAGCAGGCTCTGTTTTGGTTCTCTTACAAGGAGATGGTACAAAGAGAATTCACAATTTAGCATCTAAAACATAGTTGCATGCTTATGTTTTGGAGGGCAACAACATCAAGACTTGGTAATCCAGCTTGGCTGGGCACGAGGCCTTGGAGAGAGATGTGATCTGGCTGTCTGACTGTCTGCTTTGATTTGTTTGAGAACAGCACTTGAGAATTATACCTGACAACCTCTGCTACACAAGCCATGTAGATGAGCTGAGGAATTTTAATGAACCGGTGTGCCGTGCCTTTTGTCTTTGCATGAAAGTACAGCTCACTTGTATTAGTAATGCTGTTCCTTTGAGGGGGGCTGGCGTGATGCCCAGCGCCCCATGGTCCGCtccactaaaacatcatttaagCAGGGCAGAGGTTAAGCTTGTGTGCCGTTCTCATGGCAgtttagggggaaaaaatggTTTATCAGAATCAAACTGAGGTTAGCAGTTTCCATATCGCTCCTGACCCTTCCTGTACGCTGCTGTGACCCAGCCTCTTTCCTTCTGATCCTGGGATGTAAGTGATGTAAGTGACGTGGGACTGAAGGGCCAGTGCTGGTGGAGGAGATCAGAAATCAGAGCAGGCTTCCTGTTCGCTCCACCCTAGAACACGCTGAGTCAGGACACGGCACCGACACTCCCTTCACCGAGCGTCCTGCTTGTCTCTGCACTGCTGCGCGTCATAAAAGAGCCACTTACACTTATAAAACTCTAGTTTACGGTCATAAAGGTGCTCCGGGCCATCATTAAGGCCATTTGGGAATGTAGAATCAATCTGGAACACTAAATGTTTATGCACAGCAGATGTTTACTGTAGTTTTGTGTTCTCGTGACTTGGAGATAAATGTTTCTAATGAGCAAGTCATATATTTCCTCGGCCTACTGGTGTTGTGCTGACAAAATATGCAGATACAATAAGTTATGACAGGATGGATTATGAATGATTCTGAATAATGAGGCAAATATGTATTTGAATGAACTGTGTATAACTAAAAGGATTTAATGCCGTTTGTGTCTGTATACAGTGGCATTCAAAATTGTAAACATTGTTTTCAAgaaagtaatactttttttttagcaaggatgcattagtgacagtaaagacattccaaattatgtctttttttagattaatgctgttttgaactttacattcatcaaagaatcctgaaaagaggagacaggaagtgaagtgggGGAGGGGTGGGTAGGACTGCGAAAGGTCAGAATTCAAACTCAGGACGGCCATAACGCAAAGGCATCATACATGAGCGCATTTGCCCACTAGGCTATCAGCGCTGACCAAACATGGCATTTTGAGCAACTGTAACCAAGCTTTGAAAAGGCTTTATACACAAGATCCACATTTGCGCATTTTATCCAAAGTCCAATTATGTATCACATGCACTACGTGTAGACAGATATCCGGGGATGTTTCATTACAAGTCTTTCCACCAGATGATTGTTTTTCTGTGCAAGCCATAACTGAAGGTTAACACATATTTAAGAAGTTGCTGTATGCCAGATGACTGGCGAGTCCTGGAGATTAGCATTTACACTACAAACGCAATGTTTCCGGCTTCCACCTAATGTGTTTTGGGTGATTAGATCACAAAATGCCTTGGGCAGCAGCACCAAGAATCAAAGAGGTCCTTCAAACAACGCTATAATCATCACTTTCATTCGTGCTCCTGTTTTTAGATGGCAAAGAGTTAATGTTTAGGTCGTTTAATGGTCTCAGAGTGATTAACGTGTTTGATGTGCATTTATCTGTGTTGTCTGGCAGCAGTGGTGAGGTGTGAACGTTTAAACGCAGGGTTGAGTGTGGTGTGAACGGCGGGTGGAGGACGATAGGCCTGGGTGAGAGGGCAAAGCGGAGAGAGATAAGTGCTCCACCACTCCCTGCCCTTCCTGAGAAGCACAGAGGCTCCCGCCCTTCTTCACACACGTCAAGATATGACGACACACTCATCCCTGTTACAAAGAaactctttctcttctcttaaACACAGTCCTTTACTTTTATTGGCCTTCAGAAGTAATTATATTCTGAGTTTGTACTGAGCAATATACGGTAACTTGAAAATCATGGTGCTTTCAAACATTGCAAAATACGAATGATAgtgttgaaatataaaaattagaCAAGAAAGGGATGAAATGAATCCgacttttaatataaaaaccatTCCAAActattgaaaacatttaattggaACTCTTTATGTTCTGTGTCGTTAAACAAGAGGTCAGGAGTTGCGATATGTCTCTACTCCCTTTATTTTGGCCCCCTAACCCACCCTTGTAGATTGAAGGAAATTACGCTTGGGTAATgttaagcaaaaaaacaaagcttaaCATTGCCAGAGCACtggtaacattattattatgcttgcaattaataaaattaagtaatagGAGGATAGTAATAGCAACATTATTTCAAATGCGGCATTCATATATGTCAGCGTTCAAGAGGAGGCAagggaaaatgaaataaaattacatttaaaaagtaaaatgaaataggAGGGTAGTAATGCCAATgttagacagatagatagatagatagatagatagatagatagatagatagatagataacatttatttaaaatttaaaatgaatctgaGAAAAACCATATGTTGGGAGTAGTAgcaacataatttaaaattcaGCATTCATATCTGTGAGAATACGAGAGGAGGCaagggagagaaagacagagagagaatgaacagagaaggagagaagTGAAGAATACGTGTGTAAGTAAGTATCCCTCAGTATGTCTGACAGTTCAAAGCCGGGCTGCACTTAAAACAAAACCTCAGTAGAGTTGTGTAAGTATTCAGTTTGAAGGTGCTCCTTTACTGTCCTCCAAACGAGCTCTCATGAACTGTGATTCTTGACAAATGCCATCATTAATTCATCCAGAGTCTGATGATTACAGGCCTGGACTGATCTATGAAGTGTATTTAGTAAAGTGCTGTTATCTCAACCACATACTAATGAATATGAAAAACccaatttatttcaatttttttttaaacagaccgTGCTTGACAAGAGTTTGCATGTGTTTACTTAGTACCTTGTGTAACTGATACAAATTGAAAAATTATTAGTGTAATgtcatgcaaataaaacaaactataaaccCAGATAACAACATTGTTCAGTCTCGTTTTTCATTCTCATAGCACGCTGTTTATAATTTAGAAGTCAGATACTCTGTGGCTCCA

Function

GO:

id name namespace
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0001889 liver development biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194226 lncRNA downstream 196844 8353533 ~ 8355117 (-) True G131511
TU194223 lncRNA downstream 268520 8283098 ~ 8283441 (-) True G131508
TU194222 lncRNA downstream 269137 8282601 ~ 8282824 (-) True G131507
TU194221 lncRNA downstream 271701 8279994 ~ 8280260 (-) True G131506
TU194216 lncRNA downstream 302734 8248821 ~ 8249227 (-) True G131501
TU194433 lncRNA upstream 83836 8639428 ~ 8639657 (-) True G131675
TU194432 lncRNA upstream 102567 8658159 ~ 8659014 (-) False tdp2b
TU194440 lncRNA upstream 168914 8724506 ~ 8775727 (-) False hey1
TU194441 lncRNA upstream 168914 8724506 ~ 8786729 (-) False hey1
TU194439 lncRNA upstream 193433 8749025 ~ 8775727 (-) True hey1
XM_043218510.1 mRNA downstream 102217 8436291 ~ 8449744 (-) False bzw2
XM_043218511.1 mRNA downstream 104706 8436291 ~ 8447255 (-) True bzw2
XM_043218137.1 mRNA downstream 116823 8430681 ~ 8435138 (-) True rbbp4
XM_043217433.1 mRNA downstream 139127 8377097 ~ 8412834 (-) False kiaa1522
XM_043217434.1 mRNA downstream 152377 8376208 ~ 8399584 (-) False kiaa1522
XM_043218142.1 mRNA upstream 1308 8556900 ~ 8559488 (-) True arl4ab
XM_043218572.1 mRNA upstream 5785 8561377 ~ 8569332 (-) True scin
XM_043217458.1 mRNA upstream 21674 8577266 ~ 8581347 (-) True tmem106bb
XM_043217454.1 mRNA upstream 44514 8600106 ~ 8627992 (-) True necab1
XM_043217952.1 mRNA upstream 98906 8654498 ~ 8659486 (-) False tdp2b
XR_006247071.1 other downstream 231060 8289588 ~ 8320901 (-) False trit1
TU194205 other downstream 231076 8287294 ~ 8320885 (-) False trit1
XR_006247052.1 other downstream 422691 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other downstream 422703 8121512 ~ 8129258 (-) False khdrbs1b
TU193992 other downstream 946818 7602133 ~ 7605143 (-) True G131373
XR_006247069.1 other upstream 171667 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247085.1 other upstream 195777 8751369 ~ 8757673 (-) False hey1
TU194713 other upstream 753128 9308720 ~ 9309352 (-) True G131861
XR_006246990.1 other upstream 1104303 9659895 ~ 9664459 (-) True cibar1
TU195128 other upstream 1752366 10307958 ~ 10311928 (-) False elp2

Expression Profile