RNA id: XM_043217952.1


Basic Information

Item Value
RNA id XM_043217952.1
length 1707
RNA type mRNA
GC content 0.43
exon number 7
gene id tdp2b
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 8654498 ~ 8659486 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atacaatatgatATGCGGTGTTGGGCATGTTACGTTTTTACTAAATTTACTTAACTTCTCACAAATCTatcaaattctaaatattattgtaaatattttcaactcTCTATGGACACCTTGGAAAAAGAATCGGCATAgtatttttatagcattataatatgTTGTGCTAATTCAGCATTGTAAGATGATATAACCttaataattagaataaataataataaatcacgtTGTCTGCGTTCGCTCAAATTGATTTGCTGAATCCCAAAGGAAGGATCGACAGGGAAATACAATGAAGAATATTGTTTACATGTAGCGTGTCAATCCTGTGTTTTATATGAGACTCTCTAGCTCTGTATGCATCTTTGCGTATGCGAGTCAAAGCGCCGGTGACCCGTGAGCCTTCACACTAGAGCAGGGGTCACGAAGTTCggtgcagagtttagctccaaccctaatcaaacacacctgaagcagttAATCAGGGTCTTACTATAGGTATACTTctaggcaggtgtgttgaggcaagttggaactaaactctgcaggacaccggccctccggCTTTAAGTTTGATGACCCCTGCACTAGAGTTTATGAGAGCACTGAACTCTTTCTTCGAGGCTCATATGGACTCGGTCTTTGATGTTGAGGAGGATGCAGAGGAAACTAAAGATGTGTCTGGAAATAAGAGAAAGGAGATGAATTCCTCAGATACTGCTGATACTTTAGGAACAAAGAAGAAATTTAAGGCGGACAAGATGGATTGCATTGACCTGACAGCTGAGGAACCTACCTGCTCCAGCAGTGTGATCCCCCAAGAAAGTCGGGCTGAAAGTGTTGTAACCCAGTCTAATACGGAGGACAGCAAGCTCTCTGTCATCAGCTGGAACGTGGATGGTTTAGACACCTTAAGTCTTGCAGAGCGCGCCAGGGGCTTGTGTTCGTATCTAGCTCTATACACACCAGATGTGGTCTTTCTTCAAGAACTCATTCCATCTTATATTCAGTATCTTAAGAAACGTGCCGTCAGCTACTTGTTTGTTGAAGGAAGCGACGATGGATACTTCACAGGAATAATGTTGAAGAAATCCAGAGTAAAATTTCTGGAAAGTGAGATCATCTGTTATCCTACAACACAAATGTTGAGAAATCTATTAGTTGCTCAGGTGACTTTCTCAGGTCAGAAGCTGTACGTGATGACATCACATTTAGAAAGCTGTAAGAACCAATCAGAGGAGAGAATGAAACAACTGCGAGTTGTGTTTCAAAAGATGAAGGAAGCACCAGAAGACGCTACTGTCATTTTTGCCGGGGACACCAATCTCAGAGACTCTGAGGTGGTAAAGGTGGGAGGTTTGCCTCCAGGTGTGTTTGATGTTTGGGAGCAGCTGGGCAAACAGGAGCACTGCCGATACACCTGGGACACCAAAGCAAACAGCAATAAGACTGTGCCTTACATCAGCAGATGTCGTTTCGACCGCATCTTCCTTAGGTCTGCTAAAACCGGCCCAAGAGTCGCTCCTGACCACATGGTCCTGGTCGGAATGGAGAAACTGGACTGTGGCCGTTACACCAGTGATCACTGGGGAATTTACTGCACTTTCAAAACATGACTATAACATCCCCAAGGACTACATGTCTCTCTTATAGAAGCTGGTTTTAAAGAGTGTTTGTACCAAAATAAAGAAGGAGAAGAGTGCCTACAAA

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0016605 PML body cellular_component
GO:0070260 5'-tyrosyl-DNA phosphodiesterase activity molecular_function
GO:0030145 manganese ion binding molecular_function
GO:0004518 nuclease activity molecular_function
GO:0003697 single-stranded DNA binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194433 lncRNA downstream 14841 8639428 ~ 8639657 (-) True G131675
TU194405 lncRNA downstream 98906 8541224 ~ 8555592 (-) False G131654
TU194404 lncRNA downstream 98906 8551961 ~ 8555592 (-) True G131654
TU194226 lncRNA downstream 299381 8353533 ~ 8355117 (-) True G131511
TU194223 lncRNA downstream 371057 8283098 ~ 8283441 (-) True G131508
TU194440 lncRNA upstream 65020 8724506 ~ 8775727 (-) False hey1
TU194441 lncRNA upstream 65020 8724506 ~ 8786729 (-) False hey1
TU194439 lncRNA upstream 89539 8749025 ~ 8775727 (-) True hey1
TU194471 lncRNA upstream 260554 8920040 ~ 8920695 (-) True G131697
TU194658 lncRNA upstream 380462 9039948 ~ 9048451 (-) True G131820
XM_043217454.1 mRNA downstream 26506 8600106 ~ 8627992 (-) True necab1
XM_043217458.1 mRNA downstream 73151 8577266 ~ 8581347 (-) True tmem106bb
XM_043218572.1 mRNA downstream 85166 8561377 ~ 8569332 (-) True scin
XM_043218142.1 mRNA downstream 95010 8556900 ~ 8559488 (-) True arl4ab
XM_043218510.1 mRNA downstream 204754 8436291 ~ 8449744 (-) False bzw2
XM_043217955.1 mRNA upstream 937 8660423 ~ 8664940 (-) True c19h6orf62
XM_043217954.1 mRNA upstream 8576 8668062 ~ 8671099 (-) True LOC122323849
XM_043217959.1 mRNA upstream 12645 8672131 ~ 8726317 (-) True ripor2
XM_043217958.1 mRNA upstream 12645 8672131 ~ 8713470 (-) False ripor2
XM_043217962.1 mRNA upstream 12645 8672131 ~ 8713056 (-) False ripor2
XR_006247071.1 other downstream 333597 8289588 ~ 8320901 (-) False trit1
TU194205 other downstream 333613 8287294 ~ 8320885 (-) False trit1
XR_006247052.1 other downstream 525228 8118949 ~ 8129270 (-) True khdrbs1b
XR_006247051.1 other downstream 525240 8121512 ~ 8129258 (-) False khdrbs1b
TU193992 other downstream 1049355 7602133 ~ 7605143 (-) True G131373
XR_006247069.1 other upstream 67773 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247085.1 other upstream 91883 8751369 ~ 8757673 (-) False hey1
TU194713 other upstream 649234 9308720 ~ 9309352 (-) True G131861
XR_006246990.1 other upstream 1000409 9659895 ~ 9664459 (-) True cibar1
TU195128 other upstream 1648472 10307958 ~ 10311928 (-) False elp2

Expression Profile