RNA id: TU194681



Basic Information


Item Value
RNA id TU194681
length 1121
lncRNA type intronic
GC content 0.41
exon number 2
gene id G131838
representative True

Chromosome Information


Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 9141853 ~ 9217661 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCTGGAATCAATCTTTAATGTAAACAGCAGGATGTTGCGATCTTAAACCTATAACAAACGCGaggggtggaaaaaaaaaaaaaatcataaaacataataCCCACAATCTTAACttaaattaagaaatgaaagtttaaatgaaatttgacGGCCCTGAAAATTAAATTCCtttataaacatacacaaaatgtataatacTGACTACTTGGCAGCAATCACGAATATCACAAAAGTTTATACCAGCTTACAAAAACAGAAGCTCAATATTGCTTTGGAATGTTACAGCAGTCTGCCATGAGTCTGGTTGATGTCAAGTGAAGAAAAGAGCTATATCTACACGCCTGCGTTATAATCAGACAATGGTAACAATGTATGCGCAAAGCAGGTATGGTTTAAGACAAAAGAGGCAGCCTCTTGCATGAAGCTGCCTATTTAATTTAACAGTCTACAGTAGAAGAGGCATGAATGGGATACTTGGAGAAATCATTAAGAATAAACTTGGACTCCGCTAGCAATATAGCTGCCGCTTGTTGGAGTGAGAAACATACTACAGTGAGTGCTACATGCCACGATCCCCTACACTTCTTGCACACTCTACATCCCACTCCGAACAGCCAGAAATTATGATGGGGCAAAAATTCTTGACACATAACCATTTTTAAGCCAGAGCAGGTGGGCTGTTTAAGGAATGTAACCATTCAAAGAGATGTCAGGAAATGACTGCGACAGGACTAGAGTGGTTTAGGACCTGAGGACCAGTTTGTGGTAGTGGTTCTTCAACCACACCAGATGGTTCATAGGCCGTGCAAGCCAAGTCCATTAAAATCTGCAAATCCATTGTGATGAGGCGCACTAGAGAGCCAAGTTTTAGCAGGAAAGAGATGtccgtttttctttttctgaaactttTTGTAAAAGTCCTTCNTTCCAGTATGCATTTGGGAAAAATCTGACTGTCCAGTGAAAGGAGATTAGTTGCAGTCATAAACAAAGTCATAATTGCTTGGCTCTTTGGGGATAGGGGGAGGAACGTCAGGGATTTGGATGTTCTCCAGGTCCAGGAGGCGGAGCTTCATCTCCATGCTGAGAAGAGTGTCCATGTCTGAGCGAGTAACTCCGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU194665 lncRNA downstream 60748 9080850 ~ 9081105 (-) True G131827
TU194658 lncRNA downstream 93402 9039948 ~ 9048451 (-) True G131820
TU194471 lncRNA downstream 221158 8920040 ~ 8920695 (-) True G131697
TU194441 lncRNA downstream 355124 8724506 ~ 8786729 (-) False hey1
TU194440 lncRNA downstream 366126 8724506 ~ 8775727 (-) False hey1
TU194699 lncRNA upstream 42673 9260334 ~ 9268308 (-) False G131852
TU194700 lncRNA upstream 42673 9260334 ~ 9269148 (-) True G131852
TU194701 lncRNA upstream 42673 9260334 ~ 9268308 (-) False G131852
TU194747 lncRNA upstream 274752 9492413 ~ 9494654 (-) True G131882
XR_006247031.1 lncRNA upstream 335882 9553543 ~ 9555368 (-) True LOC122323628
XM_043217175.1 mRNA downstream 32850 9098865 ~ 9109003 (-) False zgc:91944
XM_043217174.1 mRNA downstream 32852 9098865 ~ 9109001 (-) True zgc:91944
XM_043217591.1 mRNA downstream 65828 9071705 ~ 9076025 (-) True zbtb8b
XM_043217593.1 mRNA downstream 70858 9063758 ~ 9070995 (-) False LOC122323620
XM_043217594.1 mRNA downstream 70945 9068352 ~ 9070908 (-) True LOC122323621
XM_043217966.1 mRNA upstream 2990 9220651 ~ 9223822 (-) True LOC122323857
XM_043217186.1 mRNA upstream 7602 9225263 ~ 9229774 (-) True LOC122323382
XM_043217184.1 mRNA upstream 36903 9254564 ~ 9259020 (-) True LOC122323379
XM_043217758.1 mRNA upstream 240652 9458313 ~ 9469633 (-) True nt5c1aa
XM_043216997.1 mRNA upstream 262149 9479810 ~ 9484192 (-) True si:dkey-284p5.3
XR_006247085.1 other downstream 384180 8751369 ~ 8757673 (-) False hey1
XR_006247069.1 other downstream 403067 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247071.1 other downstream 820952 8289588 ~ 8320901 (-) False trit1
TU194205 other downstream 820968 8287294 ~ 8320885 (-) False trit1
XR_006247051.1 other downstream 1012595 8121512 ~ 8129258 (-) False khdrbs1b
TU194713 other upstream 91059 9308720 ~ 9309352 (-) True G131861
XR_006246990.1 other upstream 442234 9659895 ~ 9664459 (-) True cibar1
TU195128 other upstream 1090297 10307958 ~ 10311928 (-) False elp2
TU195129 other upstream 1090297 10307958 ~ 10310675 (-) False elp2
TU195233 other upstream 1952609 11170270 ~ 11170913 (-) True G132219

Expression Profile