RNA id: XM_043218186.1


Basic Information

Item Value
RNA id XM_043218186.1
length 2325
RNA type mRNA
GC content 0.40
exon number 4
gene id triqk
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 9734220 ~ 9753556 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCAGGAACTGACAGTAAACAGTGCAATTCCACTACGTGGCATTTAAATGAATCGGGAGTCAGCTATATGTGTGTTACTTTCTTATAAATGCCattcgtttttatttaaaacaatccaCAAAACGGACATTTGTTTTgtgaaTAAAAGATGGGGAAAAAGGATGCAAGTTCTGTCAAGTTGCCGGTCGATCAGTACCGTAAACAGATCGgAAAACAGGATTACAAGAAAACCAAGCCGGCTCTGCGAGCCACTCGGCTGAAGGCGGAGGCGAAGAGAAGTGCTCCGGGAATCAGGGACACCATATTGATCGTTGTGGCTGTCTTGGTCTTCCTGCTAGGCGTCTATGCGTTCTTCTACCTCAACCTGAGCACCGAGCTGGATCTGGACGCGGACATGGACTGAAGGACTTTTCTCACAGACGCCATCTCAGAGTGGCTCAACCCATGAACTACTCATGTGCCAGCAGTTTGATAgtattatacatttcttatcTTTGTCCCTTTTTATATCAGCGGAAGCTGAAAGAAGATGAGTCTTAAAGtgcatagaattttttttttttttccccatgcaGCGTTGATAATCCtttctgattattaataaaGCTTCACATATGTCCCACAGCTTTGGGATTTAAAGAACCAGCTTGTTTTCCATTTGgatcttttagttttaaaggaatagttcacccagaaatgaaacttctgtcatcTTTAACTCGCTCTCATgtcttttgaaatgcatttggcTCTCTGCGTGAAACTCCAAAAGgagtttttttatatcataatttctaggttgttgtttttgtatataatcAAAGACTAGATTTTCACTGTATAACAAATATCAGTGACAGAGTTATTATATGGCTTCATGAAACTTATATGGTGCTTTGAATCGAAGTCTTTGTTGTCCAAATTTATTTCCAGCCCCACAATAACACATACTATTAATACACTTAATTTTACAGTCCAAAACAACAACCACATAAAGCATACAGAATCTTCATGTCCCAAGGACTACAGACACATAGgatataaaatagatttatgataatacattttacagcaatttataataaatttgatAACAGCAATTAGTTGCATAACATGctgtacattcatttatttaataaaataatggcagATGGTATAATATTTTTGGCCCAACTTCTAAACGTCTTATTTTTGTTCCAAGTCATAGgggtttagaatgacataaaggtgagtaaatgataagtACGTTTACGTTTTtatggtgaactatccctttaatcaTTTCCATTTTGAGGTTGTGCAAAAATTGGATTCAAATTGGTTGGAATTGTATTACATAATCTACTGAAGAGAcagagggagggaaaaaaatctgcatcCTGTCAAGAAAATATGTGAAATGAGTGAAGCAGGCAAGAAGGTATATTGCATTCCATACCGCAAGCACTTCTCACAGATGTAGACATCTCAATGCTGGAGATCAGAGGCAATCTATGAACGTGTTTGTCTGTGTAAAGCTGACGTTCTCCGTCTCGTTTCTCGTCATCGTGCAGCTCGTTACTAGCATATCAAACATCGCGAACCTTGGTTATCGAAAGCCAAAAGAGCGTCAGTGAAGATACCAAACATTAACACGTAGACCTTGATGTGCTCTCCGCTTTTGTGCGAGTGTGTGACCTCTAGAGACGTGGAAACGGCACTTGAAGCATTATCAATCAGCGTGAGGTGCTGTTACTGTTAGCTAGCGTGCATCTTTTGATCTATCTCCGAAGATAAAACGCATGGCCCTGCCTCGGTCTATGACATCCAGCGCTTCCTTTACACGCTgctgggtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatccgTGGGAGTGAGACAGAGTCGTAGGGTGGAAAATGAAAGGCTGAAGCTGATGACATTCAAAGTTCATTTACATTCTCTTTGTATAGCGCATTGGATCTCGTACAAACGCACAGCAACGACTTATTTCATTCCAGGCCGTGAGAGTTGTTTTATCTTTCGCTGCATGAGGTATATGTGCCTAACTCAGGACAACTGCTTTGCTGCTCGGCCCTTATTTTCCTGGGACGTCTGACTGTTATCATTAATTCAAGGATTGATACCTattgaacaaaacattttcgtAGCCTGTCTTTGATTTGGACTCGAGAGCTTTCCAAATTCTTTCATAGTGAGACCGAACTAAACCAAAACAAAGAGTCTCGTGTTCCTTGTTGactgttttgcttgtttttcttctcttgtttCTATCACACttgagataaaataataaacattgtcAAAACGCGTTGGTA

Function

GO:

id name namespace
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194637 lncRNA upstream 70866 9661351 ~ 9663705 (+) True LOC122323289
XR_006246991.1 lncRNA upstream 71680 9661584 ~ 9662891 (+) False LOC122323289
TU194621 lncRNA upstream 153883 9577759 ~ 9580688 (+) True G131797
TU194586 lncRNA upstream 210623 9523113 ~ 9523948 (+) True G131777
TU194577 lncRNA upstream 250534 9483819 ~ 9484037 (+) True G131769
TU194797 lncRNA downstream 948 9754504 ~ 9755924 (+) True G131913
TU194834 lncRNA downstream 119595 9873151 ~ 9912756 (+) True G131932
TU194866 lncRNA downstream 188524 9942080 ~ 9944925 (+) True G131958
TU194874 lncRNA downstream 224037 9977593 ~ 9984306 (+) True G131966
TU194899 lncRNA downstream 273335 10026891 ~ 10402167 (+) True G131982
XM_043217964.1 mRNA upstream 124917 9607322 ~ 9609654 (+) True lratd2a
XM_043217963.1 mRNA upstream 129208 9586257 ~ 9605363 (+) True fam91a1
XM_043217606.1 mRNA upstream 159138 9539319 ~ 9575433 (+) False spire1a
XM_043218066.1 mRNA downstream 85288 9838844 ~ 9890473 (+) True runx1t1
XM_043218067.1 mRNA downstream 85288 9838844 ~ 9890473 (+) False runx1t1
XM_043218068.1 mRNA downstream 85288 9838844 ~ 9890473 (+) False runx1t1
XM_043218069.1 mRNA downstream 103596 9857152 ~ 9890473 (+) False runx1t1
XM_043218286.1 mRNA downstream 162057 9915613 ~ 9926803 (+) True pex1
TU194625 other upstream 95610 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 196078 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU194520 other upstream 570499 9160391 ~ 9164072 (+) False LOC122323856
TU194231 other upstream 1361751 8370801 ~ 8372820 (+) False yars1
TU194022 other upstream 1948151 7784779 ~ 7786420 (+) False si:ch73-130a3.4
unassigned_transcript_2194 other downstream 174844 9928400 ~ 9928473 (+) True trnai-aau_70
TU195256 other downstream 1768710 11522266 ~ 11523881 (+) True LOC122323782
XR_006247120.1 other downstream 3551450 13305006 ~ 13305144 (+) True LOC122324249
TU196534 other downstream 5033988 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 5081081 14834637 ~ 14837952 (+) False LOC122323257

Expression Profile