RNA id: XM_043216956.1


Basic Information

Item Value
RNA id XM_043216956.1
length 2702
RNA type mRNA
GC content 0.50
exon number 24
gene id elp2
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 10291272 ~ 10311936 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAAGATGGAAGCGTCTGTAATGGACACATGTCATGTTTCTTGTTGTGCTAATCGCACTCCTAACGTTGTGTCATGGGGCAGAGGGGGTCTCATCGCATTTGGGACATGTAATTCAGTTGCTCTTTATAATCCACAGGAAATAAGAATTGTTGAGGTGCTGAATAAACATACTGGAAGAGTGAATGCTGTCCAGTGGGTTCATAAACAAGACTGCAGTAAGTCGTTTGCCCTGGTCTCCGGTGGGTCGGATAATAGTGTTATTGTCTGGGAGAAGCAGGATGGGAAGTTCACAGCATGTGCAGTGTGTTCGGGACACTCGGCTCCCGTGTGTGCAGTGGATGCCATGTCTTTGCCCACCTCTCAATTACTGGTGGCCTCAGCGTCGTCTGACTCCACCGTTAAACTCTGGACATGCAGTTCTGATGCAGTTGAATGCCTCCAGACCGTATCTTTCGAGGGCGGGTTCATGATGGATGTCTCCTTGGCGCTGTTGCCAGGCAGCAGAGTTCCAGTACTGGCCTGTGGAGGAGATGACAGCAGAGTTCACCTGTATGCGCAGCTCAATGCACAGTTTCAGAGGCTTCTGACTCTGACAGGACATGAGGATTGGATCCGATGCGTAGAGTGGGCCGCTAAAGATGGAGAGCTCTGGCTAGCCAGCTGTTCTCAGGACTGTCTGATCAGAGTGTGGAGACTGTTTGCCAAGACTGCCACTGAACCAGACCAACAGACTGACGCTGTTCTCAAAATGAAGGAGAATGTTTTTCAAGTGTCTGGAGATGAGTTTGCTGTGACTCTTGAAAGCGTGTTGGCTGGCCATGAAAACTGGGTTTATGGGATTCACTGGCAACCTCCACGTGTCAAAGGCGACTCAGTGGAACAGCCCCTGAAGCTGCTCTCTGCCTCAATGGACAAGACCATGATCTTATGGGGGCCAGAGGAGGATTCAGGCATGTGGGTTGAGCAGGTTCGTGTTGGGGAAGTTGGAGGAAATACCCTGGGTTTCTATGGATGCCAGATGAGTCCAGACGGCTTTATGATTCTGGCTCATGCCTTTCACGGAGCGCTGCACCTCTGGCACTGTGACAGCAATCAGGGAGAGTGGAGGCCCAGTGTGGTCATTTCGGGTCATTTTAATGCAGTGCAGGACTTGAGCTGGGACCCTGAGGGAGAATTTATTATCACTGTCGGATCAGACCAAACCACTAGACTCCTTACACCCTGGACCAGAAACGGATGCTCAGAGGTTTACCTGCACGAGATCTCAAGGCCGCAGATACACGGTTATGACATGCAGTGTCTGACTATGGTTGGGCGTTTTCAGTTCGTGTCCGGTGCTGATGAGAAGGTCCTCCGGGTGTTCAAAGCTCCAAGGAATTTTGTGGAGAATTTTGCTAACATATCACGCACCTCTCTGGAGAAACTGCTGGGCTGTAATGACATAGCAGATCTCCCAGAGGGAGCCAGCACTCCTGCCCTTGGCCTGTCCAACAAGGCCGTGTTTCAAGGTGACCTCACATCTCAGAGCTCTCAACAGGACAGTGAAGATTTTACCAGCCTGTCCGACCAATATAAAGAATCCTACTTCCAACCTCTCAAACTCACggAGCCTCCGACAGAGGACGACCTCTTGCAGAACACACTGTGGCCAGAGGTACAGAAGCTGTATGGACACGGCTTTGAGATGTTTTGTCTGGCGTCGGATTCTGAGAGGACGGTGGTTGCCTCGGCCTGTAAGGCCTCTAAACCAGAACATGCTACCattcttctgtggagcacaacTTCCTGGAAACAGCTTCAGTCTCTGCCCTGCCACAGCTTGACCGTCACCCAGATGGGGTTCTCGTTGAATGGACGCCTTCTGCTCTCGCCGTTTCGAGATCGCACCTGGTCCTTATGGAGACGAGGAAACCCTGACTCAGATACAGaggcAAACTTTTCTCTCTACGCGAACACTACTAAGGACACAGCGGTTCACGCGCGTATTATTTGGTCATGTGACTGGAGCTCTGACAGCAAGTACTTTGTGACGTCAAGTCGAGACAAGAAGgTAATCATCTGGGGTCATCGTGGCTCTGGAGTCAGTGTCGGTGAATGTGAGGGTGAAAGCGTGACCCCTTGCTCCTCTGTTCTGGATGTTGGAGATTCAGCTACTGCTGTGTCTATCTGCCCATATGTCTGTTCAGATCAGAGTTATTTGCTGGCTGTAGGTCTAGAGAATGGGAAAATTGTGCTGTATAAATGGAGGCCGTCAGAGCATTTGTCTTCTGGATCAGACTggagcagatttggagaaagcAATGCTTGTCAAAGTCACACTCTGACGGTGAAGAGGCTGCGCTGGAGGCCGAGGCCAGGACGGGCAGGGCATGGTGGAAACGAAGAGCGAGCCTGGGTTCAGCTAGCCAGCGCTGGTGCCGACCATGTCGTCAAAATCTTCAACATCAAAATATCAGCCCTGTGACTCCATGCCGCCTCTGGTGATTATCTGCAGAGCGTCCAGCTGATATTCAGTACGAATGAACTGCTGTGAAGTCTTCAGCTGGCCAGTACGCCGTTTTTCATGGGGGATTCTGGGAACCCTTTTCTCTTCTTCGATTTTCAGCACTAATGTGATCTGTAAACACAAACTAATGTACTAtttatgatgtttaaaaaatatattgctttgTATTGTAATAAATGGCTCTATTCCAGTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006368 transcription elongation from RNA polymerase II promoter biological_process
GO:0010950 positive regulation of endopeptidase activity biological_process
GO:0043248 proteasome assembly biological_process
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0061133 endopeptidase activator activity molecular_function

KEGG:

id description
K11374 ELP2; elongator complex protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195119 lncRNA downstream 36034 10198573 ~ 10255238 (-) True G132128
XR_006247025.1 lncRNA downstream 345558 9942136 ~ 9945714 (-) True LOC122323594
TU195062 lncRNA downstream 360033 9929869 ~ 9931239 (-) False elmo1
TU194851 lncRNA downstream 400749 9877452 ~ 9890523 (-) False G131944
TU194850 lncRNA downstream 400749 9886462 ~ 9890523 (-) True G131944
TU195133 lncRNA upstream 26080 10338016 ~ 10362483 (-) False ctnnal1
TU195184 lncRNA upstream 428438 10740374 ~ 10745106 (-) False trappc3
XR_006247002.1 lncRNA upstream 468528 10780464 ~ 10783613 (-) True LOC122323417
XR_006247056.1 lncRNA upstream 859090 11171026 ~ 11175620 (-) True LOC122323785
XR_006247057.1 lncRNA upstream 859090 11171026 ~ 11175451 (-) False LOC122323785
XM_043218058.1 mRNA downstream 265621 10012408 ~ 10025651 (-) True c19h18orf21
XM_043218512.1 mRNA downstream 279513 10007041 ~ 10011759 (-) True rp9
XM_043217545.1 mRNA downstream 306967 9929866 ~ 9984305 (-) True elmo1
XM_043218287.1 mRNA downstream 376213 9912365 ~ 9915059 (-) True otud6b
XM_043218288.1 mRNA downstream 379530 9909104 ~ 9911742 (-) True lrrc69
XM_043217967.1 mRNA upstream 3685 10315621 ~ 10362527 (-) True ctnnal1
XM_043218496.1 mRNA upstream 62775 10374711 ~ 10378838 (-) True sla1a
XM_043217473.1 mRNA upstream 80788 10392724 ~ 10402213 (-) True ndrg1a
XM_043217127.1 mRNA upstream 98141 10410077 ~ 10411619 (-) True si:rp71-45k5.2
XM_043217128.1 mRNA upstream 101745 10413681 ~ 10416026 (-) True psma2b
XR_006246990.1 other downstream 626813 9659895 ~ 9664459 (-) True cibar1
TU194713 other downstream 981920 9308720 ~ 9309352 (-) True G131861
XR_006247085.1 other downstream 1533599 8751369 ~ 8757673 (-) False hey1
XR_006247069.1 other downstream 1552486 8727259 ~ 8738786 (-) False si:dkeyp-120h9.1
XR_006247071.1 other downstream 1970371 8289588 ~ 8320901 (-) False trit1
TU195233 other upstream 858334 11170270 ~ 11170913 (-) True G132219
TU195332 other upstream 1414387 11726323 ~ 11737482 (-) False LOC122323871
TU195352 other upstream 1520237 11832173 ~ 11832907 (-) True G132292
TU195513 other upstream 2123843 12435779 ~ 12438071 (-) True bet1
TU195819 other upstream 2285838 12597774 ~ 12669196 (-) False sem1

Expression Profile