RNA id: TU195451


Basic Information

Item Value
RNA id TU195451
length 2336
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G132355
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12178945 ~ 12181367 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

attttttcatttaggtAGACAAAATTTTTGGGAACAGAATAAAGAGgattctaaaaaaatgtatggaaagGGTGCTTAAAATTTCTGATAAAGgcaattataatgttaaaaaacttCAGATAAATAGTGTTCATATCGATATTGGAATTATATTGTATCGAccaaaattaagaaatgtattgTGATTTTAGTCATATTGTCCAGTCcttatgttaatataaaaaataattctgactaaaaagatgaggatgaggaaggGTACAGAGTAAATGTACCGGAAGTGGAAGCCCCACAGACTGTGGAATGTATTGAGCGTAGAGATGCATGGGAACTGGCACATACACTGGCACTGGCACAGGCAGCACTATCACTTTAGGACTTCCATCTGCaggCTATTTGTGTGTCAGCATCGCAGGTGTGAGGTTTACAGGATGTGGCTTTGTTTTTGCTTATGGATTTATATGGCAAGTCCTTGTCTTTCTGTGTTTGGGATGAAGAGACGGGAGCTTTCACGGCAGACTTCTGCAAGCAGAGCAAAGAACAAGAGATCTGTTTAATCGCTAACCAGACTGATTCAAACAAGCACTCAAAGCTCAAAAGTGACAAATTAGACTTTTTGAATCCCACTTTCGCTCTTGATAAGTTAGTTACTCAAAGTCTCTACAAGTATAAATACAGGTCTTTCCTGAACTCACATTTCCTGTGACTTTTACAGGAACAGAGCCTGAGGAAACAAagggttaaattaaatatgaatgataCGAGCTAACAATGCATCTCAGTCTTTAATCATATGCATTATGTTAAAGTGATCCATCCAGGTTGACACGAATGTTTAGATAGTCGATGCATCTGAGGTTAATCACCTTTTGGATCTGCGTTTTCCAAAACACCTGGCTTTTTGTCGGACGCGCTTGAAAGTGAGACGACATTGGCAATGACTGGTGTGCCCTCTTTAGTACTTTGAGGAGCTGCAGAGGATACTGGGGTCACACCTGTGGAGACATTGACAGCGCAGGACTCCAGactaaagaaaatgaaacatttaggATGTAATAACTTTAGCTAATCAATTACAGAATCTACAGATGTAATGAAGACCGAATGGGACAAAAGCAGACCGATACACCCAAATATTTGGAAGAGGACATACCTTGTGTGGCTGTAGATTTATTTGAAACGACCCCAGTGATGCCCTGCAGACTGCAGAAGAACATCAGGCACCGAAGGCTGCAGAAATGCTTCATCTCACCCAGCCATTTCACAGTATCCGTTATCTTCTTGGCCTGCCTGCACATTGAGCACTTTACTTCCTGTAAAAAttgtgcagcagcagcattTACTGTTACTTTCGGAAACAATAACTAATCTTATATCAATATCTTGAGCGATATCCTAAGCGTAACGATGCAGCACAAAggtacttaaaaaaacaatatggtGAATTCTGCACCACGTCAGCTCAAACCATTTTCCTCCAGTTTCCTCCTTGGGACATTTTCCTGGTTGCATTTACATTGGCAGCAGGAACTCTGAAGTGGCGTACAGCTATGTCTTTATGTGCTGCATTTACAGACGTCAATAACCAGTGAATGCAGGACGACGTGATTGGTGCCGTTTTTCGCTTTGTGTTGTGGATTTTATGATAACggaaatgaaatatttgtgtttgagtggcttttttaaaatgctttttgtatgACCTTGGCCAATCAGTGTACACTAATATCACTGGCAGTTTCCATGGAACTATTTTAGAACCTACTCTGAAGCAGGAGCTCGTTTCGTCCTCAGAACTAAATCCGTTCCTGTGATGTGatcacaccaaaaaaaaactggttcTTTTGCCAATATTTCTAGAACTATATGAAGGTTCCACTTGTGCGAAAAATAAGGTCACTTATGTGAccccttttttgtctttttcttacTAATCTCATCAGcatataagaaaataattaagtaaCTATCCAAGTAACTGCATAACGGGATAACTAACcgaaaacaactaaaaatattaagtcGGTTTagttagtaaataaataactatgtAACCAAGTGGtaaataactacatttaagCAAGTAACCAACAACGTGAATAACTACATAAATAACTACGTAACTTAACAGCTAAATTctattgaataataaaatattacctgACGCATCAGTGAATTCTGTTTTAACAAGCAATCATTCCCGCAGAACTCCTCTTGCTTCCCGTCAAAGACATCAGTCACTACAGTCTTAGAAGTGCTGTTACAGTAAAAGCAGTTGCAACAGTGTTTCTTTCCCCAGCGTTTGAACAGGCTATGCTCAAAGAGAGTCTTGCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195449 lncRNA downstream 1539 12174563 ~ 12177406 (-) True G132353
XR_006247055.1 lncRNA downstream 8097 12162615 ~ 12170848 (-) True LOC122323784
TU195432 lncRNA downstream 54950 12123604 ~ 12123995 (-) True G132336
TU195426 lncRNA downstream 58347 12120347 ~ 12120598 (-) True G132333
TU195425 lncRNA downstream 112330 12066015 ~ 12066615 (-) True G132332
TU195460 lncRNA upstream 67014 12248381 ~ 12249423 (-) True G132363
TU195506 lncRNA upstream 152084 12333451 ~ 12379151 (-) True G132398
TU195528 lncRNA upstream 270917 12452284 ~ 12452705 (-) True G132417
TU195541 lncRNA upstream 287553 12468920 ~ 12471830 (-) True G132428
TU195542 lncRNA upstream 302249 12483616 ~ 12484168 (-) True G132429
XM_043217978.1 mRNA downstream 422507 11709923 ~ 11756438 (-) True LOC122323871
XM_043217879.1 mRNA downstream 592874 11584050 ~ 11586071 (-) True LOC122323775
XM_043217975.1 mRNA downstream 682332 11490127 ~ 11496613 (-) True LOC122323869
XM_043218014.1 mRNA downstream 1060664 10876437 ~ 11118281 (-) True csmd2
XM_043217089.1 mRNA downstream 1433816 10740374 ~ 10745129 (-) True trappc3
XM_043217875.1 mRNA upstream 7915 12189282 ~ 12190901 (-) True efcab1
XM_043217881.1 mRNA upstream 9671 12191038 ~ 12192305 (-) True LOC122323777
XM_043217880.1 mRNA upstream 9671 12191038 ~ 12192251 (-) False LOC122323777
XM_043217882.1 mRNA upstream 16508 12197875 ~ 12199318 (-) True LOC122323778
XM_043217858.1 mRNA upstream 199077 12380444 ~ 12415751 (-) False calcr
TU195352 other downstream 346038 11832173 ~ 11832907 (-) True G132292
TU195332 other downstream 441463 11726323 ~ 11737482 (-) False LOC122323871
TU195233 other downstream 1008032 11170270 ~ 11170913 (-) True G132219
TU195128 other downstream 1867017 10307958 ~ 10311928 (-) False elp2
TU195513 other upstream 254412 12435779 ~ 12438071 (-) True bet1
TU195819 other upstream 416407 12597774 ~ 12669196 (-) False sem1
TU195818 other upstream 462597 12643964 ~ 12669196 (-) False sem1
TU195817 other upstream 485897 12667264 ~ 12669196 (-) True sem1
TU195943 other upstream 846450 13027817 ~ 13029349 (-) True cart4

Expression Profile