RNA id: TU195560


Basic Information

Item Value
RNA id TU195560
length 624
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G132440
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12541319 ~ 12541942 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgttttctgaagtgGATTAGACAGATTTCCTGTAGGAGCTAAAACCAATGTCCTTTCCTCATACCTCTCTGATAAGCACAGCTTTAACCGAGACTGATAAGGAAATTTGTCCTGTGCATTAATTGTTTCCCGTCACATTATGATGATGCCCATCTGGTACCTGCATGGTGCTTCACCTTCCACTATATCACTATTAATAGTTTGGGAGCAAAAAATGAGCTGCTGTATAAAGTGTGTCCtggtgaatgagtgtgtgtgtttatatgaggTCTGGTTTGAGGACACTTGTCAGACAGAAGACAGATGAAGGTTTTAGTAATTAATAAGCCAGTGGGTGAGAGtgttgaggtgtgtgtgtgtgtgtgtgtgtgtgtttttgtggctCACCTCCTGCAGCAATACTTCTCCTTGGACACTGTAAGGCTGTCAGTCTCTCAGTCAGCTGGGCTCGGCTCTCAgcgctgttgttgttattgtttaccTGGATGCCATTTTGCTTCATCAGCTGCATCAGCTCTGACTCCAGTGTAGCAATCTATACAAAACCACACGTGCTGTAGTCTTTATACAATACAGATACAGTAATATagctaaacatttttacaatttaacatttaaaac

Function

GO: NA

KEGG:

id description
ko05016 Huntington disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195559 lncRNA downstream 2625 12537198 ~ 12538694 (-) True G132439
TU195557 lncRNA downstream 15726 12513117 ~ 12525593 (-) True G132437
TU195555 lncRNA downstream 29987 12510986 ~ 12511332 (-) True G132436
TU195542 lncRNA downstream 57151 12483616 ~ 12484168 (-) True G132429
TU195541 lncRNA downstream 69489 12468920 ~ 12471830 (-) True G132428
TU195562 lncRNA upstream 1180 12543122 ~ 12543332 (-) True G132442
TU195563 lncRNA upstream 1950 12543892 ~ 12544712 (-) True G132443
TU195564 lncRNA upstream 4550 12546492 ~ 12548170 (-) True G132444
TU195565 lncRNA upstream 6587 12548529 ~ 12551505 (-) True G132445
TU195590 lncRNA upstream 14316 12556258 ~ 12556645 (-) True G132455
XM_043218307.1 mRNA downstream 32714 12497228 ~ 12508605 (-) True sgce
XM_043218309.1 mRNA downstream 32715 12497228 ~ 12508604 (-) False sgce
XM_043218312.1 mRNA downstream 32716 12497228 ~ 12508603 (-) False sgce
XM_043218308.1 mRNA downstream 32716 12497228 ~ 12508603 (-) False sgce
XM_043218311.1 mRNA downstream 32723 12497228 ~ 12508596 (-) False sgce
XM_043217771.1 mRNA upstream 16969 12558911 ~ 12568503 (-) False pdk4
XM_043217770.1 mRNA upstream 16969 12558911 ~ 12568499 (-) True pdk4
XM_043217794.1 mRNA upstream 77841 12619783 ~ 12657157 (-) False LOC122323727
XM_043217792.1 mRNA upstream 77841 12619783 ~ 12657157 (-) False LOC122323727
XM_043217793.1 mRNA upstream 77841 12619783 ~ 12657150 (-) False LOC122323727
TU195513 other downstream 103248 12435779 ~ 12438071 (-) True bet1
TU195352 other downstream 708412 11832173 ~ 11832907 (-) True G132292
TU195332 other downstream 803837 11726323 ~ 11737482 (-) False LOC122323871
TU195233 other downstream 1370406 11170270 ~ 11170913 (-) True G132219
TU195129 other downstream 2230644 10307958 ~ 10310675 (-) False elp2
TU195819 other upstream 55832 12597774 ~ 12669196 (-) False sem1
TU195818 other upstream 102022 12643964 ~ 12669196 (-) False sem1
TU195817 other upstream 125322 12667264 ~ 12669196 (-) True sem1
TU195943 other upstream 485875 13027817 ~ 13029349 (-) True cart4
TU196058 other upstream 742589 13284531 ~ 13285461 (-) True G132733

Expression Profile