RNA id: TU195562


Basic Information

Item Value
RNA id TU195562
length 211
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G132442
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12543122 ~ 12543332 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAACAACTGTAGCTATATTGAAAGAGCAGCGGGGAAAAATTCCTCCCGACCGTAGTACGGGTCTGATCTGCAATTATGGCAATCGTTTGGTGGAGGTTTAGGGTGGGACAACCACCACTTTTTCCGACATTCTTTTTTCATCCTGTACTGTCCCGTACTTTACACATATTCCTGCAAGTGGTGCACTGCTCATTTAACTAGAATAGGAGTA

Function

GO:

id name namespace
GO:0070279 vitamin B6 binding molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195560 lncRNA downstream 1180 12541319 ~ 12541942 (-) True G132440
TU195559 lncRNA downstream 4428 12537198 ~ 12538694 (-) True G132439
TU195557 lncRNA downstream 17529 12513117 ~ 12525593 (-) True G132437
TU195555 lncRNA downstream 31790 12510986 ~ 12511332 (-) True G132436
TU195542 lncRNA downstream 58954 12483616 ~ 12484168 (-) True G132429
TU195563 lncRNA upstream 560 12543892 ~ 12544712 (-) True G132443
TU195564 lncRNA upstream 3160 12546492 ~ 12548170 (-) True G132444
TU195565 lncRNA upstream 5197 12548529 ~ 12551505 (-) True G132445
TU195590 lncRNA upstream 12926 12556258 ~ 12556645 (-) True G132455
TU195813 lncRNA upstream 27609 12570941 ~ 12573541 (-) True G132580
XM_043218307.1 mRNA downstream 34517 12497228 ~ 12508605 (-) True sgce
XM_043218309.1 mRNA downstream 34518 12497228 ~ 12508604 (-) False sgce
XM_043218312.1 mRNA downstream 34519 12497228 ~ 12508603 (-) False sgce
XM_043218308.1 mRNA downstream 34519 12497228 ~ 12508603 (-) False sgce
XM_043218311.1 mRNA downstream 34526 12497228 ~ 12508596 (-) False sgce
XM_043217771.1 mRNA upstream 15579 12558911 ~ 12568503 (-) False pdk4
XM_043217770.1 mRNA upstream 15579 12558911 ~ 12568499 (-) True pdk4
XM_043217794.1 mRNA upstream 76451 12619783 ~ 12657157 (-) False LOC122323727
XM_043217792.1 mRNA upstream 76451 12619783 ~ 12657157 (-) False LOC122323727
XM_043217793.1 mRNA upstream 76451 12619783 ~ 12657150 (-) False LOC122323727
TU195513 other downstream 105051 12435779 ~ 12438071 (-) True bet1
TU195352 other downstream 710215 11832173 ~ 11832907 (-) True G132292
TU195332 other downstream 805640 11726323 ~ 11737482 (-) False LOC122323871
TU195233 other downstream 1372209 11170270 ~ 11170913 (-) True G132219
TU195129 other downstream 2232447 10307958 ~ 10310675 (-) False elp2
TU195819 other upstream 54442 12597774 ~ 12669196 (-) False sem1
TU195818 other upstream 100632 12643964 ~ 12669196 (-) False sem1
TU195817 other upstream 123932 12667264 ~ 12669196 (-) True sem1
TU195943 other upstream 484485 13027817 ~ 13029349 (-) True cart4
TU196058 other upstream 741199 13284531 ~ 13285461 (-) True G132733

Expression Profile