RNA id: TU195564


Basic Information

Item Value
RNA id TU195564
length 1679
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G132444
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12546492 ~ 12548170 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTGCTGTCCAGCTTGAGTAGCTGCTCTCCATCCACATTCTTGGCAGTAAAAAGAGAGACGTACTGTTCCAGGTTCAGACCCATGAGCCAGCATGACACCTGTTGACATGTCCATTCAGTCACACTGCGGTTATGCCACTGGTACGGCTTCGAAGGAGGACCGTCATCTAGAATCtgacaaacacatgcacacatacattaaCACCAATGAATCATCTATGTAATTGGCTTCTGTGAATTGTACATGCATTTCCAGAAATCTAGGTTAATAATGGAATCTGAGAAAAGAATATTGAAAAACTAGAATgaacatatattttaagtggAAAGAAGAGTCATTCAGTGATTCAAACTTGTTAAAGCAAAGTCTCACCTCGTCTTCAATCATGTCCACGCTCTAATGAACGCAGCGTAAAGGACAAGAACAACACTTGAAAAAGCTGGTCTTTCCAGGTAAAACAAAGGTGACGCTTTAGGTATagagtagtcaacatttgaaatggatcaaaacctttcatcaaagttgtcctaaaaccaaaacgtGTTCTTTTCTTTGAACTTTGATGAACTTTTTTCATCCACTTTAAACGCTGACTGCCGTGATTAAAATGAacagtcacacaggtttggagcGACACGAGGTTAAGTAAATCTTGACAGAATTTTCGGATCTTTAAACAAAACTCAGGTAGTAAGTACTAACAATACCTCGTCGGAGGAGAGCGTTAGTGTTTGCGATCGGCCGGACATCTTAGCGTCCGTCAGGAGTCCGCTGATCTCTGTGGAGCTGGTGCTGCTCAGGCTGAGGTCATCAGTGACGCCAGGACCCTGGAGGAAAGACAGACGCAGAAAGACACCTGTAAGACACGACTGTTATCTGATTGACACGCTTACCCTCGCATCATTTTGATTTGCTTGAATGGTTTCTCCATTACTTGAGAagtaatcatttatttcttgATTCTGATTGTTTTATTGACTGTGACAAAGAGTTATCAGTGTAATTACTGTTGATTGACAGTTAAGCCAATTAAGTCTCTTAAGATTAACAAGACAAAGGGAGACATGCGCACCCTGACAAAACGCTTTGTGTACACTGATACTGTCACTCACGCGATGATCGTGATAATTTGTCACCGAGtaaattcatttgcatttttagacGAACGCATTTAGGGAAAGTCTTTTAACATGATGCGCAATCAACTAACATGATGCACTTCAATACGATTCTGCTCAGATGTTCTGAACACAAGGTCACGGTTTTAAGAAGCAAATGGCATTATGGTCATTCACCGGTCATTTATCTCTGTAAAATATTGCTGAAAAGCTTTCTCAGTGTCTTCTTTCGAAGAAACACACTCTTGTCCCTGTAGAGACCATCCACACAGATAAGATGGGCACCTCCAACACCTCAAAGTCTGCGAGAGGGACACTgaactgaatataaaaaaaaactctcaatATGTTGGACTGTTTGCTGACACAAAAGTGATTCGTTCAAAGCTAATTTAATTCCTTGGCTAAGAATGGGTAGCAGGCCACAGTTTTTGTCCTTCAAACTTTATATAAGATTTGATTGTGCATTATAAGCTGGCGAAAACATTAGAGTATGATTAATTTCCCAAAATGTAATAGTAGTAATTTAGCAACAATAAAGCAGTAATGGGCAACTACT

Function

GO: NA

KEGG:

id description
ko05016 Huntington disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195563 lncRNA downstream 1780 12543892 ~ 12544712 (-) True G132443
TU195562 lncRNA downstream 3160 12543122 ~ 12543332 (-) True G132442
TU195560 lncRNA downstream 4550 12541319 ~ 12541942 (-) True G132440
TU195559 lncRNA downstream 7798 12537198 ~ 12538694 (-) True G132439
TU195557 lncRNA downstream 20899 12513117 ~ 12525593 (-) True G132437
TU195565 lncRNA upstream 359 12548529 ~ 12551505 (-) True G132445
TU195590 lncRNA upstream 8088 12556258 ~ 12556645 (-) True G132455
TU195813 lncRNA upstream 22771 12570941 ~ 12573541 (-) True G132580
TU195810 lncRNA upstream 29825 12577995 ~ 12580817 (-) True G132579
TU195839 lncRNA upstream 139633 12687803 ~ 12697296 (-) False G132602
XM_043218307.1 mRNA downstream 37887 12497228 ~ 12508605 (-) True sgce
XM_043218309.1 mRNA downstream 37888 12497228 ~ 12508604 (-) False sgce
XM_043218312.1 mRNA downstream 37889 12497228 ~ 12508603 (-) False sgce
XM_043218308.1 mRNA downstream 37889 12497228 ~ 12508603 (-) False sgce
XM_043218311.1 mRNA downstream 37896 12497228 ~ 12508596 (-) False sgce
XM_043217771.1 mRNA upstream 10741 12558911 ~ 12568503 (-) False pdk4
XM_043217770.1 mRNA upstream 10741 12558911 ~ 12568499 (-) True pdk4
XM_043217794.1 mRNA upstream 71613 12619783 ~ 12657157 (-) False LOC122323727
XM_043217792.1 mRNA upstream 71613 12619783 ~ 12657157 (-) False LOC122323727
XM_043217793.1 mRNA upstream 71613 12619783 ~ 12657150 (-) False LOC122323727
TU195513 other downstream 108421 12435779 ~ 12438071 (-) True bet1
TU195352 other downstream 713585 11832173 ~ 11832907 (-) True G132292
TU195332 other downstream 809010 11726323 ~ 11737482 (-) False LOC122323871
TU195233 other downstream 1375579 11170270 ~ 11170913 (-) True G132219
TU195129 other downstream 2235817 10307958 ~ 10310675 (-) False elp2
TU195819 other upstream 49604 12597774 ~ 12669196 (-) False sem1
TU195818 other upstream 95794 12643964 ~ 12669196 (-) False sem1
TU195817 other upstream 119094 12667264 ~ 12669196 (-) True sem1
TU195943 other upstream 479647 13027817 ~ 13029349 (-) True cart4
TU196058 other upstream 736361 13284531 ~ 13285461 (-) True G132733

Expression Profile