RNA id: TU195654


Basic Information

Item Value
RNA id TU195654
length 1365
lncRNA type read_through
GC content 0.46
exon number 2
gene id G132498
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12786644 ~ 12865595 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaaaaaaaaaaaaaacataaaaaaaggaggaaaaaaaaaaaaaaaaaaaaaaaaaaagacttgcaGCCGTTAAAAATTTCCCAGCTAAATGTGGCGGAATCATTGTTGAAATAAGCAACTGATTACACTAGGAGACCAAAACAAGCTTCAACTATTCATTTGCTCACGACTTGTGTGTTGCGTTCATTCAGACTTGAGTTgatgtaaatgattttattgaaGGATGTACCTGAAAATGTCATCGTTATTATGCGCTGTTCATTTTTCTCTAAAGGTTCATTAGGAAATGTTCCGAGTCGAACGCcgtaaaagcacaaaaacatccGCTTGCTCTCTGGCTCAGGCAAAACAGAAAGGGAAAAAGGTTGTTCTCCTCGCTAAATTGCATTTGCATCGCTTTCTTCAAAAACCTCTGCCACGTTTGTGCAGGTACATTTGTTCTACACAAAATATTAGTCCATTTATGTAGATTTGTTGATCATTCAGCAAATcagagaaatattatatatatatttatatttatattccattGTTTTAATCTCTGCGTAAAAGTCTTCATGAAATTGGAAACAAGGCAGCAGCAAACTGGGAAAGGACTAACGATCTAAAATCTGGTCTGCCGACAAAGGCTCTTATTGGCAGATATTGTTGTCAGCACACATTTTGATAGGCTCAGGACTGAATTCGTCTAAATTGGCATCAGAAAGAGGATGAGATTACGTTACTCGGGTCAGATCCTGGGCTGTAGCCTGCTTTGCAGGAAGGCTCTGATGCCTCCGAGAGGCCGCAGGTCGTTCTGGTGTTTGCGCCGATCGATGAAGGAGATGAGTCGAGAGGTATCGATGCATTCTGCCGAGCgacggccacctccgggtctCAGCCAGGGATCCTGCAGGCAGGTGGCGGCTGGGGGCCGCTTGGAAGGTTCGGCCCTGAGAAGCAGGCACACGAAATCCCGTGCCGCCTGGCTAACGCCCTGGAAGTAGTCGTCGGGGAAACTGAAGTCTAGGCGGCAGATGTTAAGGCACGTCTCCTCCACGCTCTCGTCTAAGAACGGAGACGCCCCGCTCAGCATCACGTACGTCACCACGCCCAGACTCCACAAgtcagaggagagagagacggggtcCCCGAGAACCAGCTCGGGGGCCGCAAACTCCGGGCTGCCCAGCAGAGGGTGAATGTAGGGAGTCGAGTTCAGCTGCACTGCGTCGCCGAAGTCCGTCAGTTTCACCATCGGCTGGGAGGGGCTCTGCTCCACCACAAGGTTTTCAGGCTGATCAGAAAGAGTGAAATTAACATCATGGTGTAATTAGGAAcgtgcaaaaaaatttttttttaaatcaactagTCAGTAGGTTGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195612 lncRNA upstream 118090 12667293 ~ 12668554 (+) True G132472
TU195568 lncRNA upstream 229442 12556964 ~ 12557202 (+) True G132448
TU195532 lncRNA upstream 286103 12499142 ~ 12500541 (+) True G132421
TU195496 lncRNA upstream 362752 12423656 ~ 12423892 (+) False gngt1
TU195480 lncRNA upstream 389283 12378273 ~ 12397361 (+) True G132376
TU195692 lncRNA downstream 155842 13021437 ~ 13026026 (+) False jtb
TU195721 lncRNA downstream 236354 13101949 ~ 13102925 (+) True G132541
TU195730 lncRNA downstream 253121 13118716 ~ 13123966 (+) False G132547
TU195734 lncRNA downstream 253121 13118716 ~ 13123966 (+) False G132547
TU195738 lncRNA downstream 253121 13118716 ~ 13123966 (+) False G132547
XM_043217292.1 mRNA upstream 25516 12739597 ~ 12761128 (+) True si:ch211-57n23.4
XM_043218397.1 mRNA upstream 50127 12728466 ~ 12736517 (+) True crtc2
XM_043218398.1 mRNA upstream 50127 12728466 ~ 12736517 (+) False crtc2
XM_043217499.1 mRNA upstream 60278 12707267 ~ 12726366 (+) True ago2
XM_043217057.1 mRNA upstream 86033 12698137 ~ 12700611 (+) True dlx6a
XM_043217692.1 mRNA downstream 77879 12943474 ~ 12952055 (+) True si:ch211-13c6.2
XM_043217693.1 mRNA downstream 78233 12943828 ~ 12952055 (+) False si:ch211-13c6.2
XM_043217523.1 mRNA downstream 86862 12952457 ~ 12973516 (+) False nfyc
XM_043217528.1 mRNA downstream 86862 12952457 ~ 12973516 (+) False nfyc
XM_043217522.1 mRNA downstream 86871 12952466 ~ 12973516 (+) False nfyc
TU195256 other upstream 1262763 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 2858171 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 3147683 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 3248151 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU194520 other upstream 3622572 9160391 ~ 9164072 (+) False LOC122323856
XR_006247120.1 other downstream 439411 13305006 ~ 13305144 (+) True LOC122324249
TU196534 other downstream 1921949 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 1969042 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 2283709 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 2491145 15356740 ~ 15361845 (+) True anxa14

Expression Profile