RNA id: TCONS_00009876


Basic Information

Item Value
RNA id TCONS_00009876
length 1420
RNA type mRNA
GC content 0.46
exon number 9
gene id XLOC_005078
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3043308 ~ 3053882 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttcagtagggtgaaCGAGTCTTTATATAGAAGAGCCACGAATAAGTCAAgcttaatgtttaataaattatctTCTGTAGATTTTCGCTCGCAAACTATTCAACCAATATTGTGTGAAGCCAGAAATAATGGTGTACTCAGTAGGCTATGTAACGTGGAGTAAATTAGCTAAGTAAGAGCTAAATTGTGTTAGCACAGCCACAATTTCTATCGCAGAAGATGACCGCAGCTGATTAACACCTCAATAACAATTTTACGAACCTTATGTTTCGTTATGTGAGCTGGTCATGTGACAAAACAGTTATTTTGCTGACAGTTGAGCTTTTACTGTGCTGCTTCTCGAGTGAACTTCGCTCAGTTCACTGACTAGCCAAACAAACAACAGTTTGAAACGTGAGCTGTTTGTGTGCCTGGATTAAAGAACAATGGAGATTTCATTTAGAGGAAAGCGTGCTTTGGTGACTGGAGCTGGCAAAGGGATTGGACGGGCCACCGCTCTGGCGCTGGCACGCTGTGGGTCAGAGGTCACGGCTGTCACACGCACCAAAGCTGACCTGGATAGCCTAGTGCAAGAGTGTCCCTCCATTAAGCCGGTATGCGTGGACCTGTCTGATTGGGACGCCACCAAGGAGGCGCTGAATAATGTTGGCCCGGTGGATCTTCTCGTGAACAATGCAGCCTGCGCAAAACTTCAGCCCTTCCTTGATGTCACGCCAGATCAGTTTGACATGTCTTTTAATATCAACGTGAAAGCTGCACTTCATGTTGCTCAAATCGTGGCTCGGGGTATGAAGGCCAGGGGAACTGGAGGATCCATTGTGAACGTCTCGAGTCAGGCATCACAGTGTGCCCTGAAGGATCATGCCGTGTACTGTGCCACTAAAGCAGCACTGGACATGCTGACCAGAGTGATGGCGCTCGAGTTGGGGCCGCATCAGATCAGAGTGAATTCGGTGAACCCGACTGTGGTGATGACGGAGATGGGAAAGATTGGATGGAGCGACCCAGAAAAAGCCCGAAGCATGACATCACGCATCCCACTGGGCAAATTTGCAGAAGTGGAGGATGTGGTGAACTCCATCCTCTTCCTCCTCAGCGATAAGAGCGCCATGACCAGTGGAGTGATGCTGCCCGTGGATGGAGGTTTCCTGGCTTGCTGAAGAAGTAAGGTGAAGGAGAATATGGACACATTTCATCTGTTACAGCTCATACGTGTTCATATTGGCCACGAGTGTTTATGAAACATTATTTTGGCACTGTTTCTCACAGATATTCTGAAGACTTGGAGTCATTTTGACCGTGTTATGATGGCATTTTTGTGGCAATTTTTAATTGTGTGGAATAGAGCAGCAGGAACATTCCGTGAAATATCTTGTTTTTTATcacatgaaataaagaaaatacattatggaagtttaaaa

Function

GO:

id name namespace
GO:0005997 xylulose metabolic process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0005575 cellular_component cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0004090 carbonyl reductase (NADPH) activity molecular_function
GO:0050038 L-xylulose reductase (NADP+) activity molecular_function

KEGG:

id description
ko00040 Pentose and glucuronate interconversions

ZFIN:

id description
ZDB-GENE-030131-7002 Predicted to enable L-xylulose reductase (NADP+) activity and carbonyl reductase (NADPH) activity. Predicted to be involved in glucose metabolic process and xylulose metabolic process. Human ortholog(s) of this gene implicated in pentosuria. Orthologous to human DCXR (dicarbonyl and L-xylulose reductase).

Ensembl:

ensembl_id ENSDART00000023796

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009873 lncRNA downstream 173724 2856861 ~ 2869584 (-) True XLOC_005075
TCONS_00011066 lncRNA downstream 298667 2703355 ~ 2744641 (-) True XLOC_005073
TCONS_00011064 lncRNA downstream 373808 2625669 ~ 2669500 (-) False XLOC_005072
TCONS_00011065 lncRNA downstream 385364 2645615 ~ 2657944 (-) True XLOC_005072
TCONS_00009869 lncRNA downstream 425798 2579237 ~ 2617510 (-) True XLOC_005071
TCONS_00011067 lncRNA upstream 227883 3281756 ~ 3284909 (-) False XLOC_005083
TCONS_00011068 lncRNA upstream 228273 3282146 ~ 3284844 (-) True XLOC_005083
TCONS_00010793 lncRNA upstream 277157 3331030 ~ 3382684 (-) False XLOC_005085
TCONS_00010794 lncRNA upstream 277157 3331030 ~ 3386819 (-) True XLOC_005085
TCONS_00011069 lncRNA upstream 465295 3519168 ~ 3544016 (-) True XLOC_005086
TCONS_00009875 mRNA downstream 50213 2951186 ~ 2993095 (-) True XLOC_005077
TCONS_00009874 mRNA downstream 103238 2906610 ~ 2940070 (-) True XLOC_005076
TCONS_00009872 mRNA downstream 173743 2849584 ~ 2869565 (-) False XLOC_005075
TCONS_00009870 mRNA downstream 242449 2780190 ~ 2800859 (-) False XLOC_005074
TCONS_00009871 mRNA downstream 242499 2780402 ~ 2800809 (-) True XLOC_005074
TCONS_00009879 mRNA upstream 569 3054442 ~ 3077395 (-) False XLOC_005079
TCONS_00009880 mRNA upstream 5116 3058989 ~ 3077395 (-) True XLOC_005079
TCONS_00009881 mRNA upstream 41826 3095699 ~ 3133483 (-) True XLOC_005080
TCONS_00009882 mRNA upstream 166412 3220285 ~ 3237561 (-) True XLOC_005081
TCONS_00009883 mRNA upstream 195181 3249054 ~ 3252263 (-) True XLOC_005082
TCONS_00009859 other downstream 1552720 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 2421019 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009912 other upstream 1232493 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 1241676 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 1243984 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 1244354 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009948 other upstream 2345807 5399680 ~ 5418340 (-) False XLOC_005137

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_06302441_06309359.mRNA True 735 mRNA 0.53 8 CI01000047 6302441 ~ 6309359 (-)