RNA id: TU195839


Basic Information

Item Value
RNA id TU195839
length 899
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G132602
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12687803 ~ 12701078 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAAGAACTGCGTACCTTGCTATTATTACCAGGGATGTTATTTACTTTGCCGGATTTAAGAGTGCACAAGCGGCGTAGATAACCATTTTCCATGGTGGACTGAACTTGGGAAAGACAGAAAGGCAGCTGGTCGCTCTGAAAGCTTCTGGATTTCTTCATGTAGtcaagatatcaaacattttGAGTTCTAAAGACTTACGCCAGGAAATTCAGCGGCTACCCTGGAGAACCTGGCTTCCACATGCATCACAAGCTGTTTTGTTAATCGAAACAAAGGGCGGATTGCGTGATCCAAGGCACAGAGCGGCTCGCTGTTTCCTCTCATTACAAGACGGCCTTACCAGCGAGGAGGAATATGCATGAATACATTAAAAGGTAATGAGGAAGCTGTCAGGAGAGGGTCGTTCGGGGCAGCGCTCGGCGTTGGAGAGCTTTCAGAGCGTTACGTGATGGACTTGTCATCTTGGGACGACGAGGTGGAGTTCAGCGGCGTTACTGATGGCAGCTGTTGCCAGGTCTTTTTTCGTGCTGGTAATGTAGGTGCAGAAGCGTCTCGCCTTGTATGcgatgtattttaaatgctaaattaaatatttcagttctcAAACTACGAATTCTGTCATTTCTCACGCATGAAGGAAAATGTACGCtgacttctaaaaaaaaaaaagaaggaccCTAGGGTGAACCATCATTCGCAATCATATTTTGGAATATTCACATCAAGGCAACGTGGAAACGCATAATGGAATGTCATGGCAACAACACCTGGCAGCAGTTTATCCTCATGCCCCTCCCCCCAAACCGAAAGCGCTGGAACATTATTTCTGTGAGACAGAAAGCCCTATGAACAAATAATGGGTGAGCGCCAGTTTAAATAAAGTATGGTTTATGACTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195810 lncRNA downstream 106986 12577995 ~ 12580817 (-) True G132579
TU195813 lncRNA downstream 114262 12570941 ~ 12573541 (-) True G132580
TU195590 lncRNA downstream 131158 12556258 ~ 12556645 (-) True G132455
TU195565 lncRNA downstream 136298 12548529 ~ 12551505 (-) True G132445
TU195564 lncRNA downstream 139633 12546492 ~ 12548170 (-) True G132444
TU195843 lncRNA upstream 2626 12699922 ~ 12722428 (-) True G132603
TU195883 lncRNA upstream 94261 12791557 ~ 12829799 (-) True G132627
TU195897 lncRNA upstream 157758 12855054 ~ 12857406 (-) True G132637
TU195903 lncRNA upstream 162920 12860216 ~ 12930455 (-) True G132642
TU195917 lncRNA upstream 273250 12970546 ~ 12984432 (-) False G132645
XM_043217194.1 mRNA downstream 18588 12667293 ~ 12669215 (-) False sem1
XM_043217794.1 mRNA downstream 30646 12619783 ~ 12657157 (-) False LOC122323727
XM_043217792.1 mRNA downstream 30646 12619783 ~ 12657157 (-) False LOC122323727
XM_043217793.1 mRNA downstream 30653 12619783 ~ 12657150 (-) False LOC122323727
XM_043217795.1 mRNA downstream 30691 12619783 ~ 12657112 (-) False LOC122323727
XM_043217244.1 mRNA upstream 6296 12703592 ~ 12705647 (-) True dlx5a
XM_043217500.1 mRNA upstream 29216 12726512 ~ 12727814 (-) True chrac1
XM_043217229.1 mRNA upstream 81755 12779051 ~ 12786005 (-) True gnrhr1
XM_043217566.1 mRNA upstream 165529 12862825 ~ 12941929 (-) False trioa
XM_043217563.1 mRNA upstream 165529 12862825 ~ 12941929 (-) False trioa
TU195819 other downstream 18607 12597774 ~ 12669196 (-) False sem1
TU195818 other downstream 18607 12643964 ~ 12669196 (-) False sem1
TU195817 other downstream 18607 12667264 ~ 12669196 (-) True sem1
TU195513 other downstream 249732 12435779 ~ 12438071 (-) True bet1
TU195352 other downstream 854896 11832173 ~ 11832907 (-) True G132292
TU195943 other upstream 330521 13027817 ~ 13029349 (-) True cart4
TU196058 other upstream 587235 13284531 ~ 13285461 (-) True G132733
TU196152 other upstream 797534 13494830 ~ 13498090 (-) False G132784
TU196165 other upstream 797534 13494830 ~ 13498090 (-) False G132784
TU196166 other upstream 797534 13494830 ~ 13498090 (-) False G132784

Expression Profile