RNA id: TU195897


Basic Information

Item Value
RNA id TU195897
length 2171
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G132637
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12855054 ~ 12857406 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCACACTCAAACTATGGCTGCTTTAAAAGCCAAATTACTTAATATCCCACAAGCTCACCCAAACATCTTGTTCCCTCACAGATCAAAGTGAAATCAAAGTGACAACTACTAATTGTATCGCAGTTCAAATAAGCTCAGAACCACGTGGCATAAAGACCTATTGTTTAAAAGGAGCAAACTTTTTTGGGTGGGTCCCCGCAGCAACCCTCCCGAGGACAGCCAtattggcatgaaagaaaaatcagtCAGGTTCAACTTTCTGGAAAACACTGCGTTATACAAATTACTTGCACCTTCTCACACTTTGGGTTTTTCCAGACATTACTAGAAGATCCTAAGCAGTAAACATAGTCTAATGAACACACACTCCTGCACATGAAGACTATCTTTTCATCTCCTGTTTCCCAATATAAGCCAGAGGTTAGGCAGAATTTCTGCGGAGATTAGAAGTGAAATTTGGCATAAACCCAATGCTCCCTCTCGTCTGGAACAATACAACTGAAAACTGGCACAGGATCATGGACCTTTTCTGAACAATGTACAAACACCCTGATCATATAACTGCAGGggatttttcttaaaaactcACTCCGcatatattttaggttttttgtttaaattaaatgccaAACCTCTGTGGCGACTAATACAGCATAGGCTGATCATTGCTGACTGGATTAACGCTCATTAGGCATGTGCTTTTTACTATTCTATCGTCTGGCTCATAGTATTgtgcagatacacacacacacacacacacacacacacacttctacaGAAATCCATACCTTGCACGGGGCCATTATCCATAATCTCTTTCATAATCTCATTCTCCTGTGAGTGGAAAAGCAACAAGTGAGTTTAGTTAACAGCATACTCTAGcctaatgctatttttaaactgcaaatTCTGCATTCTCCATGaaaagaaatatgcatttataataaaatgactaaaataatggggttttttttacatacagtacAAGCAGTCTGACGACGTATGggtaaaacatttctgtattccatatacattttcatatacagTATTACTACACtgaattgtttaattgttcatCGCATTCCATATTCACATCTGTGAACGATATATGATCTAAAACATGCCTAGAGACATATATATGAGCTAGACTGTGCCTTAAATAAGACAAATGGGTGGTAAGATATGGCTCAGAGAGAGAATACGTTCAACCATGACATGACTGCTAATGTAATGCCTCTCCAGACAGTTGAGAGTTATTCCTCCCTTTGGCTTTGAGTTGAAGGGTTTTGACTGATGAAGAAATTGAACACAGAAAAGCACACAGATGCTGGGTGTGAGggaaaaaacataaatccccGATGCTTTAACCATTGGTATTACAGTATGCGGGCAGAGGTCTGCATGTCTTACAGAGAAAATAATTCTAACGTGTCAGAACAAACAGGCTGACAGAAACATCCTAGATAAAGTTCCTTTTTGTAAGTTAATAAGAGTAATTAGGGCCTGAACTGAAAGTACGGTACTAAAGCACTGGGACAATTTTACGCGAGCTATTTCTCAGTAGGCTACCATTTAAAGGGTTGCATTCGCACCGAGAGTGGGCACTAAGTAGTGACGTGAGCCTTGTGGGCGGcgttcaccaaaaataaaacaaagattaatatCTTGAAGAAAAGGAAAACTTTAGACCAAAAGGGATGCTGTGGTTGgagctgtgtttttgttgtgtctTTTGGGATTCACAATAATGGACATGGAATGCTGACGTATACATGATTAACAGAACGGAAAGTCAACTGGCAGTGCTACATGTCATTGtttaaaagttgttCCTAGTTCCTGTGGTGCTAACATGCCAAAAAGTGGGTAGCACCACAAATTGGTTCGGGGTACTATGAAATAATTACTGTGGTGCAAAAGGCCCTATTGTCATTTTCTAAAAGAAACAGATCTTCTGCTTGATTTGAGACATCAGCTGACTTACATTGGAGGACAATCTGTATGGTGGGGTTGACTGGTAGATATCATTGTTGTAGCTGTGGCTGTTGGGACAGTGCGCTGTGGCTTGCCTCTTTCCTCGGCCCACCGCTCGACTTTGCATCATACAGCGAGCCACTTCAGCAGGACTTTGCTGGGGCTTAGAAAAAGGATAACACTCCTCTGTCACGACC

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195883 lncRNA downstream 25255 12791557 ~ 12829799 (-) True G132627
TU195843 lncRNA downstream 132626 12699922 ~ 12722428 (-) True G132603
TU195840 lncRNA downstream 153976 12687803 ~ 12701078 (-) True G132602
TU195839 lncRNA downstream 157758 12687803 ~ 12697296 (-) False G132602
TU195810 lncRNA downstream 274237 12577995 ~ 12580817 (-) True G132579
TU195903 lncRNA upstream 2810 12860216 ~ 12930455 (-) True G132642
TU195917 lncRNA upstream 113140 12970546 ~ 12984432 (-) False G132645
TU195914 lncRNA upstream 114341 12971747 ~ 12973516 (-) True G132645
TU195944 lncRNA upstream 174431 13031837 ~ 13032126 (-) True G132662
TU195946 lncRNA upstream 188967 13046373 ~ 13046623 (-) True G132664
XM_043217229.1 mRNA downstream 69049 12779051 ~ 12786005 (-) True gnrhr1
XM_043217500.1 mRNA downstream 127240 12726512 ~ 12727814 (-) True chrac1
XM_043217244.1 mRNA downstream 149407 12703592 ~ 12705647 (-) True dlx5a
XM_043217194.1 mRNA downstream 185839 12667293 ~ 12669215 (-) False sem1
XM_043217791.1 mRNA downstream 197989 12619783 ~ 12657065 (-) True LOC122323727
XM_043217566.1 mRNA upstream 5419 12862825 ~ 12941929 (-) False trioa
XM_043217563.1 mRNA upstream 5419 12862825 ~ 12941929 (-) False trioa
XM_043217567.1 mRNA upstream 5419 12862825 ~ 12941927 (-) False trioa
XM_043217562.1 mRNA upstream 5419 12862825 ~ 12941927 (-) True trioa
XM_043217564.1 mRNA upstream 5419 12862825 ~ 12941926 (-) False trioa
TU195819 other downstream 185858 12597774 ~ 12669196 (-) False sem1
TU195818 other downstream 185858 12643964 ~ 12669196 (-) False sem1
TU195817 other downstream 185858 12667264 ~ 12669196 (-) True sem1
TU195513 other downstream 416983 12435779 ~ 12438071 (-) True bet1
TU195352 other downstream 1022147 11832173 ~ 11832907 (-) True G132292
TU195943 other upstream 170411 13027817 ~ 13029349 (-) True cart4
TU196058 other upstream 427125 13284531 ~ 13285461 (-) True G132733
TU196152 other upstream 637424 13494830 ~ 13498090 (-) False G132784
TU196165 other upstream 637424 13494830 ~ 13498090 (-) False G132784
TU196166 other upstream 637424 13494830 ~ 13498090 (-) False G132784

Expression Profile