RNA id: TU195914


Basic Information

Item Value
RNA id TU195914
length 1740
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G132645
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 12970546 ~ 12984432 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACCTTTTTAgggagttttattttttcacaaaccAATGtctgtttacaaaaaaagaacaaaaaaaaaaaaaaaataaaataaaataaaaaatacaaataaaatttgtacCTAGGTATTGCATATCATGCTGGCAGTCATAACTACATGCAAAACAACGTGACCAACAATTTTAATAcgaaaatcaaaacaaaacaaaaccaaaagggcaataaaaaaggttacaactggtattaaaaaggtttatataaaagggtttttatttaattaaggtgTTGTTTTTACAAGTAGGTAACAGCGGAGCAGTTGACTTTCAAGGGGCAAAGGAAGTCTCTTTAAAACTGGTCCAGAAAGACATGCAAGGAAAGCACGTCAattacacattcacacacattcacacgaAGAGGACCATTCTGCATGTAGAAAACCCAACAATAAGAAGCCCTTTAACAAATACAACGTTATCAAATTTCAAAACTATACAAGATACTACAACTGAACTAATACAATTACTATAGAATTACAGAGTTAAACTACAGAGATGCAGAATGTGTAGATTATGGCTTTTATCAAGTTTAGAACTCTACACATCATGAGATGGCATAATCTGTCAAAATGGATGagggcttaaaaaaaaaaaaaaaaaaaagaagatttgtTTTTCCACGAAAGAAGTGCCCTCCAGCTCAGGTTTCACAAGCCTCACTCTAATGTCACTATCACTGAACAGATCTGAAAACATAATCTCTACCCATATCCACATTAAACTATGAAACAAGGACATATTCTACCTATACTGCAAGGAAGACAGTGGGTTCGTAGCCATATTGCAGAAGACATACAGTTGAAATCAATACGGCAGAAATCAAATCTCTGCCAGTACACACTGATCCTTCCAGCACTGTAGTAAAAAGACCCAAACTCCGTTAACAAAACAGTAATGCATGTATTTTGGACGGTAAATTATGAAGCTTAAATCTGAAGTTTATTATTTGATTGCTGAATTAAACCAGTCCGAGAACTTGATCAAAGTATGGCATGAGATGAAGGGAAGTGGAAGGACTGGGTGTTGGGTGCGTGGCAGCTCCTCTTCTTCACTGTGGTTGCTTGGTGGTGTCAGGAGCTCCATGGACCAGTGAGGATTTGGACGGACAGCCTCAATCCGCACTGACCTGTGTGGTGACCTGCCCATCAGCCGTCTGGTTGGTGGATTGAATGAACATGGGCTGGGTCAGTTCCTGTCCTGCCGGCATCGTCACCTGCTGGATCTGATACAACTGCTGTGGAGTCACAGGAAGAAAGGGAGGCGTGTGCGTTACTGACGCGATACATATCTGCATTCAAACTGTAGCTGTGGGAATAAGGCTGACAGAAAGTCGGTTAGGACAGAAGAGCATGTAATTATAAGATATAGAACAGcagtataaaatgttttatattttaatgtaacacaatgggtatttttatattttgatgctacatgcaaatgtatgctttgtttaaattaatactttcttTATTTAGCAATGacgcattaaaggaatagtacacccaaaaatgaacatcatttactcacccttcaGCACtaccaaacacaaaaaagcttGTAGcaaggctgttttgggtcaccactgatttacataatattttttcctaccatggaagtcagtggtgaccaaaacagtctgtttacaaactttcttcaaaatatgttttttttgtgtgttctgaAATTCATACAG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195903 lncRNA downstream 41292 12860216 ~ 12930455 (-) True G132642
TU195897 lncRNA downstream 114341 12855054 ~ 12857406 (-) True G132637
TU195883 lncRNA downstream 141948 12791557 ~ 12829799 (-) True G132627
TU195843 lncRNA downstream 249319 12699922 ~ 12722428 (-) True G132603
TU195840 lncRNA downstream 270669 12687803 ~ 12701078 (-) True G132602
TU195944 lncRNA upstream 58321 13031837 ~ 13032126 (-) True G132662
TU195946 lncRNA upstream 72857 13046373 ~ 13046623 (-) True G132664
TU195948 lncRNA upstream 81269 13054785 ~ 13059310 (-) True G132665
TU195950 lncRNA upstream 81269 13054785 ~ 13059310 (-) False G132665
TU195951 lncRNA upstream 81269 13054785 ~ 13059310 (-) False G132665
XM_043217569.1 mRNA downstream 29700 12867992 ~ 12942047 (-) False trioa
XM_043217567.1 mRNA downstream 29820 12862825 ~ 12941927 (-) False trioa
XM_043218295.1 mRNA upstream 52580 13026096 ~ 13027361 (-) True si:ch211-191i18.4
XM_043218297.1 mRNA upstream 54488 13028004 ~ 13028939 (-) False cart4
XM_043217008.1 mRNA upstream 60981 13034497 ~ 13044432 (-) True si:ch211-191i18.2
XM_043218146.1 mRNA upstream 92992 13066508 ~ 13077397 (-) True plekho1a
XM_043218145.1 mRNA upstream 106533 13080049 ~ 13086017 (-) True vps45
TU195819 other downstream 302551 12597774 ~ 12669196 (-) False sem1
TU195818 other downstream 302551 12643964 ~ 12669196 (-) False sem1
TU195817 other downstream 302551 12667264 ~ 12669196 (-) True sem1
TU195513 other downstream 533676 12435779 ~ 12438071 (-) True bet1
TU195352 other downstream 1138840 11832173 ~ 11832907 (-) True G132292
TU195943 other upstream 54301 13027817 ~ 13029349 (-) True cart4
TU196058 other upstream 311015 13284531 ~ 13285461 (-) True G132733
TU196152 other upstream 521314 13494830 ~ 13498090 (-) False G132784
TU196165 other upstream 521314 13494830 ~ 13498090 (-) False G132784
TU196166 other upstream 521314 13494830 ~ 13498090 (-) False G132784

Expression Profile