RNA id: TU195950


Basic Information

Item Value
RNA id TU195950
length 4215
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G132665
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13054785 ~ 13059310 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTATGGTGAAAggtttttcctttattttccaCATCAAACTTACACCAGGTTGCATTCATTTTAAGGGTTTTATAAATCTTTCaaatttatctaaaaaaatgattgaaacaTCACTGCAATTTTTATCAGAACACATTTTTCTATCAACTCCAGGGACATTAAAAACAGTGCTTCTTCACCCATGTTTGAGGCTTCCAGACAGTTCATGGGTCTCAGTttgagaaaaatcacaaattgcGTAATCAAATTACCGAACTCTTTAGCAGACAAACGTCCATCTTTGAACAACATCccatgtcattttaataatcaaaaggaCAATTCACTCATTCATTACAACTAACTCAAATGGAGCTCATAATTGGACAAAGGAGCttgcaaacttaaaaaaaacctgacagaaaaaaaccctaaacaacccattaaaacaaaacatcaaaatccaACAAAACTAAAATCCTTTAGAGAGAGGTTTACAGCACATAAAACCCCAAATACAACACTCGCACAACAACCAAGTACTTGATATTTAAACAGGTGACCTGCGTGTATGTAAGTCCTTTGACATGTGCTTTGTATTAAAACAACTGACCAAACAgattagttaaaaaaagaaaaggaaaataaaacaacctGTTGAAACAGATACTATATACATATTGCCATACGAACATTAGATTAAAGGTATTACTCTGTAAAATACCTCAACGAAAGGTAGAAACTAACCTGTTTCCACAGCAAGACAAAGGTAGAAAGGTACTCAAGGGTACTGTTTAATCCAACAAAGCTGTTAAACCTGAACATCGTGAGAAATTTCCAGCAATGGCATTTctcttaaaaatgaacaaatctcgatttttttttttaacgtctAAGATGACATCTTGTCAAAAATAAGTGACTTCTGCATAAAATGTGAGGAAGGGCGAACTGCTCATAGGTTACACATGATTGAtctctttattaaaaaactacTTTTGAGTTTAAAACGGAAATTTGATTTTGCCAACCTACAGCTTGACTCCCCATCTTTGCTCAATTTACATCACATTTACATACATCACGCTTTAAAATTCACAAGATCACATACCATCTGGTCTGCCTACGTGAGCCTGATCTACAAGAAAAGCTGAACCAAGTGGAGACCATCCCATATAAAGAGTCTGACACAAGATCCTTGGCAGCGATTGGTTGATCCAGGAACAAAGGGGTTGACGGTCGGGGGGGGGGGATTGGCTTGCTGCTCCGTGTTGGGCCGAGAACGAGACCTGGAGAGGTAGATGAGGAGCAGGAAACGCTCTGCCTCCTCACAGAGGCCTTGGGGAGCAGGAGTTTGTGGATTTTGACAAACGTATGCTGCCGCCTCCTCTCAGTGGTGAAATCCTAGCGCTGCCTCAAACGGGCTGTTCAACAGCTTCTTTACAATCGGGAAAATCTCAAATCTCACGCCCTTGCCAACCTCCCTGTGCCCACCCCCTGATGACACCGATTTACGCGTTGGGAATAAACTTGGAATGGCTATAAATGAATTATCAATAAACCCCTTTTATATagtgtaatatataatgtatttataaaagaaaacacttagCCTCTACAGTGATTTATCTATGGTTttacaaagagagaaaaaaaaaaaacaatctgcaAGATCACGGTCTTTTTCAGGGTTGATCTACACCTTGGACGTTGTTTCCAAGAAGTCGAGCAATGGGTTAGTCGTCGTCCTCATCGTCATCCTCGCCCTCATCTTCAGCTTCCCTCTTTCGCTTCTCTCCTCGAACCTCGGCGTCTTCTTCctcttctacATAGTCGCCATCATCTTCTTCATCCTCCTGAATATCCTCTTTCATTAGGTAGGACAGTCCAACCTCTCCACCCTCTGAgccttcctcatcctcctcctcttcctcgtaTTCTCCCAGCTGCCCTGCTCCTTCCTCgccatcctcatcatcatctgCATAAAAGTAACAAATAGTGACTTGATGCAACACTTATCTCGTTTACTTTGCACCGTATGAATAGCTAACCCTTATTTATCCATGGGATGATCATCAAAacctgcaaaaaacaaaacaagcaagagCTTAATTATGGTTTTTACCGTCATCATCAGCCTCGGAGTCTGGAGCTTCATTGTCTTCTGCATCAAAGCCATCCAGGTATGTGACCTGAGGCAGCAGCTCAAAGATGCTTTCCCTGTAGTCCTCCAACGTAGTGATCTCACAGTTGAACAGATCCAAACTTTTCAGGTTCTTTAGGTTTTCAGGGCTTCCAGTGTGCTGAGTTCTTTGATCTTGTTGCCGCTCAAATTAAGGTAAGTCAGGTTGGCGCATTTCTCCGCAAGCGTCTCCAGTGACCCTGAGATGTTGTTATCACTCAGCTCCAACTGTAGCAAAGAGAATTACTCTTAAAATTAACTTAACACACTGAAAAGtttgaaacaaataataaatccCGTTACACAATTTGACCGAGTAATACTAACATTTCTAAGTCCGTTTACAACTACACTTATTCATCACGGACGATTTTCAGCGTCACACTTAAGTTTCCTTTGGACATTCTCCATCCATTTTTGTGCACTTTAATAATACAACGTGTCTGCATTAATATGTAAACTGTGTTAGGGTGTCCGTTTTCTACATTCAGTTTAAAACGCAGCAGTATTCCCGTTGAGAACAGTCTTGTCTAGCGTGTGCTGAACGCCTGTTCTCTTGACTAACCTTCCTTAATTTTGGCAGTGCGGGTAGTTTGGCCAGAGAGGTGAGACCCACGTTGACCATGCTGAGGAACTCCAGTTCCTTAAACTCATCTGTCAGGCCTTCGATCTCACCATCGCTTGAGCGACAGTTATCTACCACCAGCTCTGCTACCTGAAAGAGAGACACACATAGTTAGGACACGTTAAACTGGTAAAGCTGCAACATTTGACAACTGCTGACATAACCGATAGTGGCGGTCTGTACGGTAGCCCGTCAAATGataagctttttttctttcagtttctgtATGAGTTTTATTACATGCTGAGGTTAAGGGCTTGACATCACTTCTACTAGTGGTAGCGCGCGGTACTGCAATAACAATGAgcgttttcaaacaggtttcttAACCCCGCCCCCTCCTATTTGTCGGGAAAACATAGCCCCGCCTCTTTGCTAGGCTGGACTACTCAAAGTAACAATACTTAcaattacaatacaataatttaaactttttggggaaagcaaaataaatgcctttaaaataatattttatttcatattaaataataataaaaaaacttctttatgggtactgtaaaaatgtaaacaacctTGATGAATATCTGCCCCAAAGAATGAagcaattaaacttaaaaacccgacattatttacaataaatagaAATAGTGTTTGTGGGATTTAAATAACGCAGTGTTCTTCCTATATATCCTGCGCGTGCAAACAGTAGTGCGCTGCAGtcctaaaatttaaatattcaataactTGTTGCCCTTGCGAGGAAAGATACGACATCTTTCAGCACGTGACGTGCGTGCAGTGTGGTCTCGGTAACGCTTCCACCCCCTTTATCGCCTAGGAGTCGCGATGAACGCGCTGCCAGCGTCTCACAGGATTTTTCGGAACGCGCGCGCGCCAGTAATATTTTGCTCTCGTCCTCGCGCCGCTGACGCAAGATGCGCCCGAGTTAAAAGCCACGCGTCGTTTATACACGGAGCATTAACTCGAGCTCGTGTAAAAGATCCCATCCATCTCAGAAACCCCCCATTCAAAAGAAGCGTGCGTCTCCGCTTCGGTTCAGGCAAGCCTACGATAATCTACTAAAATCGGAGGGAGGAAGGGGGGCTCGCCCCTTCACCATCTGCCACATTCcttcaattaataaaacagtGACGGATCTGCTTCATGAAGCCGAATGCACGCCGTTTACAGTCAGtgataaataatgttatataataacgCCATTAACGTAGCCACGGAGTAAAACGgcaacttgtttttttttaaccgcaTCCGTCGAGCGACTATTTCGAGCTCCACGCGCCAATTACTCCGCTCCACGCGGCACGTAAGCACGGTGAATCAGAAACCGCTCTCCTCCGGcgactaaaacgccacaaaacGCCGTCATTTGCGCCTGAACTATTGATGCAACAAAATGACTTCCACTCCCCGCCCGTCAACGCGGAGACTCGAgcagctctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU195946 lncRNA downstream 8162 13046373 ~ 13046623 (-) True G132664
TU195944 lncRNA downstream 22659 13031837 ~ 13032126 (-) True G132662
TU195917 lncRNA downstream 70353 12970546 ~ 12984432 (-) False G132645
TU195914 lncRNA downstream 81269 12971747 ~ 12973516 (-) True G132645
TU195903 lncRNA downstream 124330 12860216 ~ 12930455 (-) True G132642
TU195961 lncRNA upstream 45569 13104879 ~ 13105591 (-) True G132674
TU195962 lncRNA upstream 47603 13106913 ~ 13107133 (-) True G132675
TU195981 lncRNA upstream 83993 13143303 ~ 13143621 (-) True G132682
TU196024 lncRNA upstream 179379 13238689 ~ 13328384 (-) True G132709
TU196047 lncRNA upstream 195526 13254836 ~ 13256019 (-) True G132726
XM_043217008.1 mRNA downstream 10353 13034497 ~ 13044432 (-) True si:ch211-191i18.2
XM_043218297.1 mRNA downstream 25846 13028004 ~ 13028939 (-) False cart4
XM_043218295.1 mRNA downstream 27424 13026096 ~ 13027361 (-) True si:ch211-191i18.4
XM_043217569.1 mRNA downstream 112738 12867992 ~ 12942047 (-) False trioa
XM_043217568.1 mRNA downstream 148500 12862825 ~ 12906285 (-) False trioa
XM_043218146.1 mRNA upstream 7198 13066508 ~ 13077397 (-) True plekho1a
XM_043218145.1 mRNA upstream 20739 13080049 ~ 13086017 (-) True vps45
XM_043218088.1 mRNA upstream 27250 13086560 ~ 13089430 (-) True zgc:153441
XM_043218089.1 mRNA upstream 40365 13099675 ~ 13102985 (-) True psmb4
XM_043217498.1 mRNA upstream 54904 13114214 ~ 13117877 (-) True zgc:110239
TU195943 other downstream 25436 13027817 ~ 13029349 (-) True cart4
TU195819 other downstream 385589 12597774 ~ 12669196 (-) False sem1
TU195818 other downstream 385589 12643964 ~ 12669196 (-) False sem1
TU195817 other downstream 385589 12667264 ~ 12669196 (-) True sem1
TU195513 other downstream 616714 12435779 ~ 12438071 (-) True bet1
TU196058 other upstream 225221 13284531 ~ 13285461 (-) True G132733
TU196152 other upstream 435520 13494830 ~ 13498090 (-) False G132784
TU196165 other upstream 435520 13494830 ~ 13498090 (-) False G132784
TU196166 other upstream 435520 13494830 ~ 13498090 (-) False G132784
TU196164 other upstream 439027 13498337 ~ 13500461 (-) False G132784

Expression Profile