RNA id: TU196134


Basic Information

Item Value
RNA id TU196134
length 1669
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G132773
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13555011 ~ 13556679 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAATGGATGAATTTTGGACGTAGTTGTATCTTTCTGAGAAGAAAATGGAATGTTTACGTGCAGAAGAAATATGAAAGCATCCATCCAATGTTTCTTGGCTCTTACAGTTACACTGAATGAGTGTGAAGCCATCGTTAAGACCTGAACTTTtgccctgttttgtttttagttctaCAGCTCTCTGATGCTCTGttctcttatttaaaaaaaaaaacactaatgttgtttttatttcatctaatcAAGTCACATTAATACAAGTGCAGATTGCACAGTGCACATTTCATGTTAAAAATTAGTGTTTTGAAATCTTCAAACCGTTTATTCTTCAACTATTGTCATATTGTCCTGCAGAAGACCTTGTTCGCTTCCAAAAGGTTACCCTTCATGTAAACTTACACTCCTGAAAATGTGAGGGCATTTATTACCTTATCTATTGTGACTACTACACACAATACCTCTGATTATcctgtgttgtgtatttaatttggGCTCATGAATAAcgcatatatatgcataaaggCACTTCACAGGTCTTCTTAAGCAATAGTGAGATAACAacagtgcttttaatttttgtttgtgtgccgAACTATGTATATGTTCTATACATagaaagtcattcattttaacaacaaaaacctgTATCAAAATTGCATTATGTCTCTTATTTTATGCACGGCTTATAAGGCCAAATTAATCATCTGTTTACCAATTATCAAACATTTGCAGAAGGCCTCATCACATCCCTCACCGACGAAACATACTGTGCAGTAATCAAGAGGCTTTTCAAGGATAAGGTTTCCaggttaaatacaatttaagatttgTAGACGGCATCTGTGGCATTCTATTGGTTGCCACATTATCCTTTTAGTTTGTACAACAAAagcaatgtatttaaaacataattcatacaCCGTTCCTGGATCTTAAAGTGTATTTGAACCAGACTATTTCTATTACTGATACATGATTGTTGGAAGGtcatagatttggagaaatttagttttcatttgttttctttaatttactGTGCTCATCAGTGTGCCTTTTTTGtactttcttatttatatacatgttgCCTAATTATGTTAGTGTTTGCTGTGTCAATCAAATACAATCAACTTTACATAttcatgaactgataaaaaaatttaatttcttttttcagacagaATAGTTTTTGGCTCGTGTTGACAGCAGCCTCGTGTTTGTATTATACTGAACAGGTTGCCATGTTCTGACTGTCTTTTAATGACATTACTGTTAGAAAGGTCTGTGGCCCTAGAGAGGTgtcttttattgacattatgaAATGAGGGATAAATGTAGATTTGGTGGTtatagttttgtgtatttagttttgtttttctccccaAACAAAGTTTTGCATTGGAAGTGATGGccagtgttttctgttttatttcatatttttttttttttttttttacaaatttgacaTTGTGTGTAGTAACAACCATTTTTACATCCATTTATGGTGGtggtatttctttctttctttttttttgttttattttgggaaaCATAACCGTTAACATTTGCATCGTCATTTGCACTTTCATAGACTATACTTGATACATTCCCAGTTTGTATGATGTGTAGCCAATAAACAGAAAGTATTGGTAAAGGTTTGCTTGGATTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196098 lncRNA upstream 41115 13513022 ~ 13513896 (+) True G132754
TU196099 lncRNA upstream 42040 13511608 ~ 13512971 (+) True G132755
TU195779 lncRNA upstream 218262 13309455 ~ 13336749 (+) True sdc3
TU195751 lncRNA upstream 428394 13125877 ~ 13126617 (+) False G132549
TU196137 lncRNA downstream 4488 13561167 ~ 13561445 (+) True G132774
TU196282 lncRNA downstream 290103 13846782 ~ 13848115 (+) True G132884
TU196318 lncRNA downstream 540597 14097276 ~ 14106261 (+) True G132910
TU196327 lncRNA downstream 611416 14168095 ~ 14168484 (+) True G132913
TU196330 lncRNA downstream 619160 14175839 ~ 14582416 (+) True G132916
XM_043218154.1 mRNA upstream 177 13536137 ~ 13554834 (+) True ankib1a
XM_043218155.1 mRNA upstream 177 13536137 ~ 13554834 (+) False ankib1a
XM_043218076.1 mRNA upstream 20033 13528592 ~ 13534978 (+) True lypla2
XM_043218077.1 mRNA upstream 20033 13528669 ~ 13534978 (+) False lypla2
XM_043218078.1 mRNA upstream 27093 13525351 ~ 13527918 (+) False pithd1
XM_043217667.1 mRNA downstream 70558 13627237 ~ 13638088 (+) True LOC122323661
XM_043217663.1 mRNA downstream 81533 13638212 ~ 13642069 (+) True lrrc14b
XM_043218208.1 mRNA downstream 785930 14342609 ~ 14343877 (+) True utp23
XM_043217343.1 mRNA downstream 831076 14387755 ~ 14391343 (+) True stmnd1
XM_043217993.1 mRNA downstream 837957 14394636 ~ 14405903 (+) True rbm24a
XR_006247120.1 other upstream 249867 13305006 ~ 13305144 (+) True LOC122324249
TU195256 other upstream 2031130 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 3626538 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 3916050 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 4016518 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU196534 other downstream 1230865 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 1277958 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 1592625 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 1800061 15356740 ~ 15361845 (+) True anxa14
unassigned_transcript_2195 other downstream 1822791 15379470 ~ 15379541 (+) True trnap-agg_21

Expression Profile