RNA id: TU196152


Basic Information

Item Value
RNA id TU196152
length 2532
RNA type TUCP
GC content 0.48
exon number 6
gene id G132784
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 13494830 ~ 13502370 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCCATTGATGACAAGACAGCGCAACTTCAATTTTTAATACCTTTATTAGTTTCTTATTCAGCAGCTTCTTTCCAAATTTTACTGTGGCAACAGGTGCAGTTCTAAACCTTTAAACACAAATTTAACTGAAAGAGGCACTATCAGTCAATAAATGGAGCCACACTTAAATCCAAGTTGGTTTCCTTTCCTGCGAAAACTTTTCCGATGGGTTTTAATCAGCATAAGCCAGTCCTTAAGTAGAGTGCCCAGGTTTAGAGAAATTCCAGGAGGTTGGGAAGAACATTCCACAACCTTTGGAACACCGTGATGAAGGGAAATTCACTTGGTCTTGGCAGCCTTCTGTGCAGACTTTGTGACCTTGCCGCTACCACCAACTTTCTTCTCAACGCTCTTGATGACACCAACAGCAACGGTCTGCCTCATGTCACGCACAGCAAAGACCAAGAGGGGGGTAGGTAGAGAAGCTCTCCACACACATAGGCTTGCCAGGGATCATCTCAACAATGGCAGCATCTCCAGATTTGAGAGCCTTGGGGTTGTCCTCAAGCTTCTTGCCAGAACGACGGTCGATCTTCTCCTTGAGCTCGGCAAACTTGCAGGCAATGTGAGCAGTGTGGCAGTCCAGCACTGGGGCATAGCCCTGAGAGATCTGGCCAGGGTGGTTCAGGATGATGACCTAAACTGCCAGCCTCCTGAGGGGGGTCGTTCTTGCTGTCTCCAGCCACGTTACCACGGCGGATGTCCTTGACGGACACATTCTTAACGTTGAAGCCAACGTTGTCACCAGGAGTGGCCTCAGAGAGAGACTCGTGGTGCATCTCAACAGACTTGACCTCAGTGGTCACGTTGGCAGGAGCAAAGGTCACAACCATACCAGGCTTGAGGACACCAGTCTCCACACGACCCACGGGTACAGTTCCAATACCTGAGaagttaaaattgttaaaaccCAATTCGTGTTTGACTAACTTAAAATGGCTTGCGTTATACCAACCTCCAATTTTGTAGACATCCTGAAGTGGCAGACGGAGGGGCTTGTCGGTGGGACGGCTGGGAGGCAAAATGGCATCCAGGGCATCAAGAAGAGTAACACCATTAGCATTACCCTCCTTGCGCTCTATCTTCCATCCCTTGAACCAGCCCAtTTTGTGCTGGGCTCCAGCATGTTGTCACCGTGCCATCCAGAAATGGGGACGAAGGCAACACTGGCGGGGTTGTAGCCGATCTTCTTGATGTAGGCGCTGACTTCCTTGGTGATTTCCTCAAAACGAGCCTGGCTGTAGGGGGGCTCAGTGGAGTCCATCTTGTTGACTCCAACAATAAGTTGTTTCACTCCCAGGGTGAAAGCCAGGAGGGCATGCTCACGGGTCTGTCCGTTCTTCGAGATACCAGCCTCAAACTCACCAACACCACCAGCAACAATCAGCACGGCACAGTCAGCctggAAGTACCAGTGATCATGTTCTTGATGAAGTCTCTGTGTCCAGGGGCATCAATGATGGTGACATAGTACTTGCTTGTCTCGAATTTCCAGAGAGCAATGTCAATGGTGATACCACGCTCGCGCTCGGCCTTCAGTTTGTCCAGCACCCAGGCGTACTTGAAGGAGCCCTTGCCACCTCAGCAGCTTCCTTCTCGAACTTCTCGATGGTTCTCTTGTCGATTCCACCGCATTTGTAGATCAAATGTCCGGTGGTGGTGGACTTTCCGGAGTCGACGTGGCCAATAACCACGATGTTAATGTGGGTCTTTTCCTTTCCCATGATTGATTagtttctgcatttaaaaaaagggagTGGAGTTAAAAAGAGACACGAGTGAAACAGACTTTTCAGCATTAAAACTTTTGAGCGGTGATTTCGTAACAAGCGATAAATGGCCCCGAGTTTGAACCGGCCTAGTTCACCATAAGGCGACTGCGACACGTGTTTCTTTAGCGTAGCGAGGTGTTAAGTTACATGAAAAAATCCAAAATGTCTGAAAGGAATCCATAAGGATGCGGACATCTGGCTCTACAGTCCGTGATAACAGTTGTTGGATGCGAGTATGCGTGGAAGCCTTTTAACAGGCCTGCGACTTGGTGCCTTTGTTCTTCTCTCGGTTCCCATTCTTTGAGAGATGGACGCACACGGAAAGAacgaaaaaaattaaactacCCCATCTCccctaatacacacacactactagaTAAGAAAGCCCCTTAAAAAACACAGTCAGCGACAAAACCACAGTTGAAAGCATAAGTGATGAGCACAAAGACTAACGAGACAACGccggaaaaagaagaaaaaaggtgAATCCgaaaaaaaccctttaaaattgtttaaaagttatCAAAAATATGCTAATAAGCGTAAAACCAAGGCCTAACCAACAGAGAAAGTACTCACCAAGATTGAGAGATCACTTCTCAGCCGCTGCTCCCCTTTGCCAGGTaacagaaagaggaagaaaaacgGTTTGGTTGGAGAATTTATACACGGGAGGAGGACCGACTGGGCTGCAACCCCCCGCTTCCTCTCCCTCCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196217 lncRNA downstream 8641 13484281 ~ 13486189 (-) True G132828
TU196206 lncRNA downstream 15511 13454496 ~ 13479319 (-) True G132818
TU196180 lncRNA downstream 117158 13375883 ~ 13377672 (-) True G132795
TU196005 lncRNA downstream 158055 13303100 ~ 13336775 (-) False G132695
TU196001 lncRNA downstream 158055 13329952 ~ 13336775 (-) True G132695
TU196230 lncRNA upstream 29161 13527251 ~ 13528140 (-) True G132837
TU196240 lncRNA upstream 50650 13548740 ~ 13549751 (-) True G132846
TU196248 lncRNA upstream 63038 13561128 ~ 13561459 (-) True G132852
XR_006247102.1 lncRNA upstream 770177 14268267 ~ 14272718 (-) True LOC122324095
TU196443 lncRNA upstream 771131 14269221 ~ 14272686 (-) False LOC122324095
XM_043218326.1 mRNA downstream 11989 13479987 ~ 13482841 (-) True ppt1
XM_043217807.1 mRNA downstream 43922 13440554 ~ 13450908 (-) True fam83hb
XM_043217197.1 mRNA downstream 73168 13418844 ~ 13421662 (-) True gpr186
XM_043217448.1 mRNA downstream 215395 13276876 ~ 13279435 (-) True zcchc17
XM_043217445.1 mRNA downstream 224410 13263431 ~ 13270420 (-) True dclk3
XM_043218074.1 mRNA upstream 11728 13509818 ~ 13516438 (-) True klhl43
XM_043217668.1 mRNA upstream 144035 13642125 ~ 13643645 (-) True LOC122323662
XM_043217666.1 mRNA upstream 146241 13644331 ~ 13646795 (-) False mterf3
XM_043217664.1 mRNA upstream 146241 13644331 ~ 13646793 (-) False mterf3
XM_043217665.1 mRNA upstream 146241 13644331 ~ 13646654 (-) True mterf3
TU196058 other downstream 209369 13284531 ~ 13285461 (-) True G132733
TU195943 other downstream 465481 13027817 ~ 13029349 (-) True cart4
TU195819 other downstream 825634 12597774 ~ 12669196 (-) False sem1
TU195818 other downstream 825634 12643964 ~ 12669196 (-) False sem1
TU195817 other downstream 825634 12667264 ~ 12669196 (-) True sem1
TU196164 other upstream 247 13498337 ~ 13500461 (-) False G132784
TU196161 other upstream 3029 13501119 ~ 13502243 (-) False G132784
TU196169 other upstream 9574 13507664 ~ 13508453 (-) True G132785
TU196632 other upstream 1286098 14784188 ~ 14784423 (-) True G133132
TU196661 other upstream 1393337 14891427 ~ 14891896 (-) False zgc:114119

Expression Profile