RNA id: TU196318


Basic Information

Item Value
RNA id TU196318
length 1460
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G132910
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 14097276 ~ 14106261 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agaaaaaagaaaatcctaaAATCATCATCTATGCACTTTAAATGCAGCAAgtgtaaaaacaataacattctAAGAATAAtggttaaaacatttacatatttatgccCTTTGCCTTGACCTTGGCCAAACAAGCTTCCAGGCTCCATCAAATACTCCTTGTGTTTCAATATTGCTAAGACCTTCAAACATAGGCAAGAtctctttcatttattataatgcagtACCTGTACTTAGCATGCTAATAACACAGTTCATCTTTCTTCTTTTGCAATAGAGTAACTGAAGTGCAagcattaacattttcaaattaaaatgaaaatttagacataaaaataaaaataaagaatcttATGTTATTTAATACCCAACTGTATAAATGGTTTGTTGAAAAGCGATGGTCTATAatgatttcagttatttttaagaGGCATTTGCAGTTAAGCAGCGTTGTAAGGCTAGTTTCTGAGAAacggggagagaaagagagagagcacaaaTTAGACATTTTGAGTCTCAATTTCCTTCCTTTTCCCCAGTTCATATAAATAATGTCTGTATGAAGTCAGACTAGACCCAACTCACTGAACTTGTGACCATGAAAAGGAGCGTGTAGAGAAGTACACATGAgagcacaacaacaacaacaacaacaacaaaacaacaacaacagacatCTCAAAAAGTTGctagcaaacaaaaacagaatctGGGAGGTTTTTGATTTtcctattcaaataaaatgcaaaactgtGAAGATTCGTGAACACTGTTAAAATGCATCAAGTGCGCGACTTGATCGCGTATTTCTGGATCATTTCTGAGCTcattattacttaaaaacaagtttttcGGTCGCTCAGGTAAGACAGTTGCCCACTCCACATGATAAAAGTTGCAAAAGGATCATAAAAACCAAAGTACAGCTGGGTGaaacaacaatataaataatgttatgcCTCTTTGAGACAACTGCCATCGAAAGGCACCAGAAACACCTGCAGTTATTAAGTTTCATCAACAGTACActgaataaaattgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtcaaaggtGTTTTTAACTGCTCTTTAGAATTAAAGGTGGAACAGAATGAATTTAGACTGACagaaagttattatttttatattatagagcACTGGCTCCcattaaaatgaccaaataaaGCACAGACTCATCAGTTTCCCTTGAATGTTCGAGCAGGAGAAAAATACAGGAAGACTTCAGTCCAATACAAGCTTCTTCATCAACTACAAAGCACAAGTACATGGTAAGAAgaggcaacaaaaaaaaaatgacaacgcTTGGAATGAATAGTGCCCTTTTGTGGCCAAAACTAAAAAAGACATAGTACTTTTGTTTGATATTCCACCTTTGGAGGAAAGGAAATTGAATAGTCttactgttttcaaaaaaaaaaaaaaaaaaaaaaagtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196282 lncRNA upstream 249161 13846782 ~ 13848115 (+) True G132884
TU196137 lncRNA upstream 535831 13561167 ~ 13561445 (+) True G132774
TU196134 lncRNA upstream 540597 13555011 ~ 13556679 (+) True G132773
TU196130 lncRNA upstream 540597 13555168 ~ 13556679 (+) False G132773
TU196133 lncRNA upstream 540687 13555011 ~ 13556589 (+) False G132773
TU196327 lncRNA downstream 61834 14168095 ~ 14168484 (+) True G132913
TU196330 lncRNA downstream 69578 14175839 ~ 14582416 (+) True G132916
TU196536 lncRNA downstream 651363 14757624 ~ 14757976 (+) True G133068
XR_006247096.1 lncRNA downstream 916014 15022275 ~ 15035422 (+) True LOC122324050
TU196596 lncRNA downstream 1089796 15196057 ~ 15281004 (+) True G133109
XM_043217663.1 mRNA upstream 455207 13638212 ~ 13642069 (+) True lrrc14b
XM_043217667.1 mRNA upstream 459188 13627237 ~ 13638088 (+) True LOC122323661
XM_043218154.1 mRNA upstream 542442 13536137 ~ 13554834 (+) True ankib1a
XM_043218155.1 mRNA upstream 542442 13536137 ~ 13554834 (+) False ankib1a
XM_043218077.1 mRNA upstream 562298 13528669 ~ 13534978 (+) False lypla2
XM_043218208.1 mRNA downstream 236348 14342609 ~ 14343877 (+) True utp23
XM_043217343.1 mRNA downstream 281494 14387755 ~ 14391343 (+) True stmnd1
XM_043217993.1 mRNA downstream 288375 14394636 ~ 14405903 (+) True rbm24a
XM_043218242.1 mRNA downstream 302728 14408989 ~ 14428817 (+) False cap2
XM_043218241.1 mRNA downstream 302731 14408992 ~ 14428817 (+) True cap2
XR_006247120.1 other upstream 792132 13305006 ~ 13305144 (+) True LOC122324249
TU195256 other upstream 2573395 11522266 ~ 11523881 (+) True LOC122323782
unassigned_transcript_2194 other upstream 4168803 9928400 ~ 9928473 (+) True trnai-aau_70
TU194625 other upstream 4458315 9636973 ~ 9638961 (+) True G131801
TU194607 other upstream 4558783 9536415 ~ 9538493 (+) True si:ch211-215i13.3
TU196534 other downstream 681283 14787544 ~ 15212430 (+) True G133066
TU196550 other downstream 728376 14834637 ~ 14837952 (+) False LOC122323257
TU196586 other downstream 1043043 15149304 ~ 15187839 (+) False LOC122323518
TU196623 other downstream 1250479 15356740 ~ 15361845 (+) True anxa14
unassigned_transcript_2195 other downstream 1273209 15379470 ~ 15379541 (+) True trnap-agg_21

Expression Profile