RNA id: TU196784


Basic Information

Item Value
RNA id TU196784
length 1520
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G133256
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15481998 ~ 15483517 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATTCATTTCCACTTCTCTGGAGGCCACTTACCATCTTATGTCTGTGTGAAATCAAAGTTGAAGGTTCATTATCAGTGAATCAGCCTCAGAGGGGTGGAGATGATTTCCGTTCTCTTATCTGAATGTGTGGGGATGAGGGCAGGCGATGAAATCTGCACTTGTGCACGCATATGGGTTTGCAAGCTACCCCCTTTTTCTAAATCGGATCCATATGAGCCTCAGATCAGAGAGCGTGTTTATCTTATAACGGATGTCTTGAGCTTGGCTGATTCAAGTCAGTTGGATTTAATTAACTCAAACAGACAGAATTTCTGATACGATGCATTAATCTCATGTTTGATGtgctttttaattgatttgttgAAGTCTGTTGCCCTTATGTATCACCTTTTTTATAGATTACATGTTTACAGGGAAGCGTACTTTTATGTCTGAGGTTATCTTTAAGGCtctgcatgttttttgtttaccCGATACCTGTACAAACGCAGACTGTTTTACCATTACATGAACTGTAATGCATaagcattttaacttttatgaaCGTTTTATGAACGTCTCCATTTTCGGCCTCCacctctttttttccttttgggaGAGGAATTTCACTGAGGCCTTGCCAAACGGCGGCTGTAGTTTGAAGTCTTGCCAGAGCGCTTTGTGCTGAGCAGCCCTCACCGCCTCcacaaaaaacacactcatCCCCCTCTTCAGATAGAAAAAGAGAGGGGGGTGGATTTACCCAGTTTGGACAGGGGGCAGGGCAACATGTCTATACAATAGACTTATATGAGCCTCGGAAAGTACAGGAACCAAAGATCCTGACTATGCAGATGTTTCttcaacttttttgttttatttttaaataattaaaatttttattttcgtgtgatttattattttttacattacaagtgtctgaataaaagtattaattaaaaaaaatatcacacagaaccaaatattattattttgtgtcatgcgtaataaaacttttaattcaGAACACAAGAATGCTAGCTAACACCCCTTTAAATTGTGCtagtatatttttttgaaaagtaaaaaaaaaactttgtctttttatgttgctacttctcagaaatatacttaaaatgtatacatgacGTATAAAAGTATACTTGACTTATacttaaaaaaagcttaaatatatttgagcTATACTTGTGccatgttttcattgttatacAGTGGTAATCTTGTctacataattataaaaaaaaataaataaaaaacaaatgaagaagaAACCAAAACAACAGATGCTTCCTAATGTAATCTAACAAGATCATCAGACATAAAACAGCATCCAAACTGTAACTTTATGGAATAAAATGTCAACCAATTAAGCGGTAATACTGACAACTTCATCTAtgttaactcttttttttagctttttgttcaaatgttgttcatttttttatttctgaaacgtACCCACATTCAGTTGTTTAAGAAAAGAATGTatgaagctaaaataaaatatttttgttcacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196781 lncRNA upstream 21292 15460338 ~ 15460706 (+) True G133253
TU196629 lncRNA upstream 103979 15374500 ~ 15378019 (+) True G133129
TU196618 lncRNA upstream 169166 15309668 ~ 15312832 (+) False LOC122323314
TU196596 lncRNA upstream 200994 15196057 ~ 15281004 (+) True G133109
XR_006247096.1 lncRNA upstream 446576 15022275 ~ 15035422 (+) True LOC122324050
TU196793 lncRNA downstream 65327 15548844 ~ 15549137 (+) True G133265
TU196807 lncRNA downstream 99688 15583205 ~ 15606585 (+) True G133276
TU196821 lncRNA downstream 141823 15625340 ~ 15626146 (+) False aste1b
TU196801 lncRNA downstream 180079 15663596 ~ 15664196 (+) True G133270
TU196978 lncRNA downstream 280433 15763950 ~ 15764619 (+) True G133394
XM_043217790.1 mRNA upstream 798 15469584 ~ 15481200 (+) True LOC122323726
XM_043217789.1 mRNA upstream 798 15469584 ~ 15481200 (+) False LOC122323726
XM_043217195.1 mRNA upstream 57501 15421141 ~ 15424497 (+) False cckb
XM_043218151.1 mRNA upstream 77452 15400565 ~ 15404546 (+) True si:ch1073-376c22.1
XM_043218152.1 mRNA upstream 77452 15400570 ~ 15404546 (+) False si:ch1073-376c22.1
XM_043217263.1 mRNA downstream 8843 15492360 ~ 15495366 (+) True cmtm8a
XM_043217264.1 mRNA downstream 11988 15495505 ~ 15497477 (+) True LOC122323444
XM_043217573.1 mRNA downstream 26020 15509537 ~ 15532560 (+) True cpne4b
XM_043218498.1 mRNA downstream 51380 15534897 ~ 15541499 (+) True mrpl3
XM_043218499.1 mRNA downstream 51380 15534897 ~ 15541499 (+) False mrpl3
TU196767 other upstream 57506 15421135 ~ 15424492 (+) True cckb
unassigned_transcript_2195 other upstream 102457 15379470 ~ 15379541 (+) True trnap-agg_21
TU196623 other upstream 120153 15356740 ~ 15361845 (+) True anxa14
TU196586 other upstream 294159 15149304 ~ 15187839 (+) False LOC122323518
TU196550 other upstream 644046 14834637 ~ 14837952 (+) False LOC122323257
TU196794 other downstream 86147 15569664 ~ 15577981 (+) True G133266
TU196987 other downstream 291740 15775257 ~ 15776674 (+) False hoxa5a
TU197370 other downstream 1202608 16686125 ~ 16692945 (+) True G133626
unassigned_transcript_2198 other downstream 1400562 16884079 ~ 16885971 (+) True LOC122323322
unassigned_transcript_2201 other downstream 1412355 16895872 ~ 16900069 (+) True LOC122324116

Expression Profile