RNA id: TU196801


Basic Information

Item Value
RNA id TU196801
length 524
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G133270
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15663596 ~ 15664196 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAGCTGTAAGTTAGTGTGTGTAAGTTCCTCTGCCTTCCTCTCCAACGACATCACCCAGACCTTCCTCTTCTGTCTGCACCGTGTGGCGGCCGCTCTGTTTCTCTCCAGAAACTTCCGTCTGCGCTCGTCTGGGTCTTCCTCTGCTGTCCGTCGGCGTCTGGCTGCGGACGGCTGTGGAGGAGATTGCGGGCAGGGGGTCTGTTTTGGTGTGGACGACAtCTGCGTCGGTATCGGCTGATGTGAAAGGGGAGGGGCTGTCTGGTGGGTGGAGCCAGGATGCAAATGGGAAGGTGGAGAATGGTGAGCGTGGCTGTGATGTGATTGGTCTTGGCTTTGATGTTGATGTGTGAGTCTTTGCGGTGATTGGCTGTGGCAGTGCTGCTGGTATGCGTGATGATGAGATGCGGATTGTAAATGTGACAGTGGGTGCTGTGGTGACGACATCATCTCCATCATGTGGCAAAGAGGATTCTGACTGCCATTGGAAACTGCAGGATGGCTGTGAGCTggcatgacctttgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196821 lncRNA upstream 37450 15625340 ~ 15626146 (+) False aste1b
TU196807 lncRNA upstream 57011 15583205 ~ 15606585 (+) True G133276
TU196793 lncRNA upstream 114459 15548844 ~ 15549137 (+) True G133265
TU196784 lncRNA upstream 180079 15481998 ~ 15483517 (+) True G133256
TU196781 lncRNA upstream 202890 15460338 ~ 15460706 (+) True G133253
TU196978 lncRNA downstream 99754 15763950 ~ 15764619 (+) True G133394
TU196988 lncRNA downstream 114539 15778735 ~ 15778966 (+) True G133402
TU197020 lncRNA downstream 200877 15865073 ~ 15865661 (+) True G133421
TU197021 lncRNA downstream 201534 15865730 ~ 15866045 (+) True G133422
TU197022 lncRNA downstream 202556 15866752 ~ 15866992 (+) True G133423
XM_043217235.1 mRNA upstream 2792 15657064 ~ 15660804 (+) True tril
XM_043218227.1 mRNA upstream 26864 15627147 ~ 15636732 (+) True wu:fc38h03
XM_043218493.1 mRNA upstream 37409 15620259 ~ 15626187 (+) True aste1b
XM_043217335.1 mRNA upstream 43954 15611441 ~ 15619642 (+) True LOC122323476
XM_043217336.1 mRNA upstream 43954 15611441 ~ 15619642 (+) False LOC122323476
XM_043217655.1 mRNA downstream 7904 15672100 ~ 15685977 (+) True jazf1a
XM_043218243.1 mRNA downstream 38960 15703156 ~ 15721058 (+) True hibadha
XM_043218153.1 mRNA downstream 83746 15747942 ~ 15749639 (+) True hoxa13a
XM_043217219.1 mRNA downstream 91379 15755575 ~ 15758836 (+) True hoxa11a
XM_043217427.1 mRNA downstream 100560 15764756 ~ 15768093 (+) True hoxa9a
TU196794 other upstream 85615 15569664 ~ 15577981 (+) True G133266
TU196767 other upstream 239104 15421135 ~ 15424492 (+) True cckb
unassigned_transcript_2195 other upstream 284055 15379470 ~ 15379541 (+) True trnap-agg_21
TU196623 other upstream 301751 15356740 ~ 15361845 (+) True anxa14
TU196586 other upstream 475757 15149304 ~ 15187839 (+) False LOC122323518
TU196987 other downstream 111061 15775257 ~ 15776674 (+) False hoxa5a
TU197370 other downstream 1021929 16686125 ~ 16692945 (+) True G133626
unassigned_transcript_2198 other downstream 1219883 16884079 ~ 16885971 (+) True LOC122323322
unassigned_transcript_2201 other downstream 1231676 16895872 ~ 16900069 (+) True LOC122324116
unassigned_transcript_2204 other downstream 1236195 16900391 ~ 16900462 (+) True trnap-agg_23

Expression Profile