RNA id: TU196952


Basic Information

Item Value
RNA id TU196952
length 822
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G133370
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15672182 ~ 15673003 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGTAACCGTGCACGAACCCGTGCACCCGTCGCTGAAACCTGCTCATGCCTATCTATCGCCTCTTAATTAAACCGAGTCACTGCTAACGCTATTAAATCTGCTGGGAGTCCGCGCGAGCGAATGCGCGCGTCACCGCAGAGAACCGAGCCAAATGCGCGGCGCAGAGACGCGCCTTCTCGCCGCTCAAGAGCGGCTGCTTAGCGGGACAGCAGGCCGAGACCGGAGCGCCACTCACCGATGTGGTTATCTTCGATGTGAACGATGAGCTCGCCCAGGGACTCGAAATGCAGCCCGCAACCGCCAAACCGGCAAACGTTGGAGAAGAAGGAGGCAGCCGCGACGCCCGTCATAATGGAGGTGTTGGCAGAGGTCCGTGAGCTTGCAGACCGGCGAAGGCGGAGGCTGTGCGGGATGGGGGTGATCGAATAGCCGGCAGCTCGTTGCGGCAGCAGCGGCGGCGGTGATTGCAGCTGGAGCTGTTTAGACGGCTGCCAGCCAATGGGAGGGGGATGGGGGGCAAAGCAGCATGacggaggagcaggaggaggaggagggaccGGCGAAACAAACATGCTGCTGTTCACCTGAGCGGACAAACAAGAGGAATGCTTGACTGAGGAGGGCCACATAAGCCACTGTATTATCGATTATGTCATTGCACCTTTTGCTCCCCTGCCAGCTTGGATTTAAAAGTGTGAGGTTTGTAAGTCCCACTGCTTGGAAATACTTttccttttgtaaaaaaaaataaataaataaataaaaaaaactttactatGCAATAGTAATGCACTGCAAAATTTAGAATAGTGTGTATAGGt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196939 lncRNA downstream 45902 15625325 ~ 15626280 (-) True G133361
TU196938 lncRNA downstream 46041 15625325 ~ 15626141 (-) False G133361
TU196859 lncRNA downstream 190980 15480332 ~ 15481202 (-) True G133315
TU196857 lncRNA downstream 247684 15413975 ~ 15424498 (-) True G133313
TU196750 lncRNA downstream 288067 15383847 ~ 15384115 (-) True G133226
TU196959 lncRNA upstream 8082 15681085 ~ 15681626 (-) True G133375
TU196960 lncRNA upstream 8755 15681758 ~ 15682073 (-) True G133376
TU196966 lncRNA upstream 64148 15737151 ~ 15737358 (-) False evx1
TU196967 lncRNA upstream 64614 15737617 ~ 15737824 (-) False evx1
TU196971 lncRNA upstream 80427 15753430 ~ 15754646 (-) True G133387
XM_043218484.1 mRNA downstream 3216 15661683 ~ 15668966 (-) False creb5a
XM_043218483.1 mRNA downstream 3216 15661683 ~ 15668966 (-) False creb5a
XM_043218481.1 mRNA downstream 3216 15661683 ~ 15668966 (-) False creb5a
XM_043218478.1 mRNA downstream 3216 15661683 ~ 15668966 (-) True creb5a
XM_043218480.1 mRNA downstream 3217 15661683 ~ 15668965 (-) False creb5a
XM_043217654.1 mRNA upstream 12151 15685154 ~ 15702155 (-) True tax1bp1a
XM_043218293.1 mRNA upstream 63944 15736947 ~ 15740329 (-) True evx1
XM_043217413.1 mRNA upstream 161901 15834904 ~ 15839908 (-) True snx10a
XM_043217415.1 mRNA upstream 170680 15843683 ~ 15847374 (-) False cbx3a
XM_043217414.1 mRNA upstream 170680 15843683 ~ 15847374 (-) True cbx3a
TU196955 other downstream 11462 15659919 ~ 15660720 (-) True G133373
TU196948 other downstream 23603 15644862 ~ 15648579 (-) True LOC122323308
unassigned_transcript_2196 other downstream 286916 15385195 ~ 15385266 (-) True trnap-agg_22
TU196741 other downstream 302446 15366434 ~ 15369736 (-) True G133217
TU196661 other downstream 780286 14891427 ~ 14891896 (-) False zgc:114119
TU197117 other upstream 249220 15922223 ~ 15924285 (-) True npy
TU197532 other upstream 607954 16280957 ~ 16508560 (-) False mbpa
TU197530 other upstream 678866 16351869 ~ 16508560 (-) True mbpa
TU197533 other upstream 686788 16359791 ~ 16508560 (-) False mbpa
TU197531 other upstream 827942 16500945 ~ 16508560 (-) False mbpa

Expression Profile