RNA id: TU196976


Basic Information

Item Value
RNA id TU196976
length 293
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G133392
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15759348 ~ 15759640 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCACATTTTATTGCTATCAGCGGAAGCATTTATTTTGCACCAGAGACAAATAGTCCACACGCACTGTAACACTAGACGCCCTCGCCTCTTTACGCCGTTTCTTCAGTCCTAATGCGGAAAGGCTCGAATATGTATCGcgattacaaaaaaacattttgagttaCACAGTTCAATTTGTCAACGGGAGAGAATGAAAGAGCTGTTCGTGACATAGTCACTGTTCTCCCGGTAATGTTCAATCATCGCGGATGGCTCGAATGAGACCGGTTAATCCTTGATTACAGCAGGCTAT

Function

GO:

id name namespace
GO:0005516 calmodulin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU196971 lncRNA downstream 4702 15753430 ~ 15754646 (-) True G133387
TU196967 lncRNA downstream 21524 15737617 ~ 15737824 (-) False evx1
TU196966 lncRNA downstream 21990 15737151 ~ 15737358 (-) False evx1
TU196960 lncRNA downstream 77275 15681758 ~ 15682073 (-) True G133376
TU196959 lncRNA downstream 77722 15681085 ~ 15681626 (-) True G133375
TU197044 lncRNA upstream 11055 15770695 ~ 15771078 (-) True G133444
TU197050 lncRNA upstream 19450 15779090 ~ 15779634 (-) True G133450
XR_006247021.1 lncRNA upstream 37658 15797298 ~ 15799128 (-) True LOC122323539
XR_006247022.1 lncRNA upstream 41145 15800785 ~ 15802812 (-) True LOC122323540
TU197074 lncRNA upstream 96024 15855664 ~ 15855934 (-) True G133469
XM_043218293.1 mRNA downstream 19019 15736947 ~ 15740329 (-) True evx1
XM_043217654.1 mRNA downstream 57193 15685154 ~ 15702155 (-) True tax1bp1a
XM_043218478.1 mRNA downstream 90382 15661683 ~ 15668966 (-) True creb5a
XM_043217413.1 mRNA upstream 75264 15834904 ~ 15839908 (-) True snx10a
XM_043217415.1 mRNA upstream 84043 15843683 ~ 15847374 (-) False cbx3a
XM_043217414.1 mRNA upstream 84043 15843683 ~ 15847374 (-) True cbx3a
XM_043217412.1 mRNA upstream 88958 15848598 ~ 15854316 (-) True nfe2l3
XM_043217911.1 mRNA upstream 143151 15902791 ~ 15919610 (-) False pals2b
TU196955 other downstream 98628 15659919 ~ 15660720 (-) True G133373
TU196948 other downstream 110769 15644862 ~ 15648579 (-) True LOC122323308
unassigned_transcript_2196 other downstream 374082 15385195 ~ 15385266 (-) True trnap-agg_22
TU196741 other downstream 389612 15366434 ~ 15369736 (-) True G133217
TU196661 other downstream 867452 14891427 ~ 14891896 (-) False zgc:114119
TU197117 other upstream 162583 15922223 ~ 15924285 (-) True npy
TU197532 other upstream 521317 16280957 ~ 16508560 (-) False mbpa
TU197530 other upstream 592229 16351869 ~ 16508560 (-) True mbpa
TU197533 other upstream 600151 16359791 ~ 16508560 (-) False mbpa
TU197531 other upstream 741305 16500945 ~ 16508560 (-) False mbpa

Expression Profile