RNA id: TU197116


Basic Information

Item Value
RNA id TU197116
length 632
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G133499
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 15937440 ~ 15938811 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtgtgttttattgtacgGACCGAGTCGTGTCGTCTGGTACAGTTCCTCCTGAAAGCTTAATGCTGCGTTTAGTTTTGCTGGGATTCAGCTTCATGTGCTAACAGCAACTGAGGTATATCCCCACCCTTAAACAAATCAACCTGCAACACAGCCATCGATCAACTATTCAGAGATTATTCTTTGGAACAGCTCGTTTCCTCCACAGTTCAACAGCTAACACGCTGAAACACAAGAAGCCTTAACAATTAAAAGGTGCCGCGTGTACATTTTTTCGCTCTGGGATCCCATCAGGTGCGCTACACGCCGTTAGCGAGCTGTGGAGATAATGCTGTACAGAATGTCTTTGCGGATTCATTATGAAACACTCATCCATATATCAAAAATCAGTCTGCAGTCTGCACATATATCAAAAATCAGTCTTCTTTTAGAAAACACATCCTATCACGCTCTCATCTCTTATATTCCATATTGCACataagttataaaatatatttgtgattcATGAATGTAAGACAACAATCAAGCTGAAGCTCATGTGCACAACGGAAAAAGGATGTCTAAAAGCTGCTTtagtctaaatatattatatatatatatatatatatatatatatatatatatattaatctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197099 lncRNA downstream 38671 15896816 ~ 15898769 (-) True G133487
TU197081 lncRNA downstream 55863 15880944 ~ 15881577 (-) True G133476
TU197075 lncRNA downstream 74291 15862942 ~ 15863149 (-) True G133470
TU197074 lncRNA downstream 81506 15855664 ~ 15855934 (-) True G133469
XR_006247022.1 lncRNA downstream 134628 15800785 ~ 15802812 (-) True LOC122323540
TU197207 lncRNA upstream 10175 15948986 ~ 15949462 (-) True G133554
TU197212 lncRNA upstream 49128 15987939 ~ 15996866 (-) True G133558
TU197220 lncRNA upstream 66301 16005112 ~ 16101982 (-) True G133564
TU197233 lncRNA upstream 78716 16017527 ~ 16024738 (-) True G133570
TU197254 lncRNA upstream 185499 16124310 ~ 16126708 (-) False G133587
XM_043218455.1 mRNA downstream 963 15931884 ~ 15936477 (-) True fam221a
XM_043218456.1 mRNA downstream 2266 15931884 ~ 15935174 (-) False fam221a
XM_043218457.1 mRNA downstream 2268 15931884 ~ 15935172 (-) False fam221a
XM_043217262.1 mRNA downstream 13175 15922225 ~ 15924265 (-) False npy
XM_043217911.1 mRNA downstream 17830 15902791 ~ 15919610 (-) False pals2b
XM_043218098.1 mRNA upstream 37521 15976332 ~ 15983111 (-) False gpnmb
XM_043218096.1 mRNA upstream 37521 15976332 ~ 15983111 (-) True gpnmb
XM_043218382.1 mRNA upstream 50768 15989579 ~ 16005685 (-) True rftn1a
XM_043217238.1 mRNA upstream 67494 16006305 ~ 16011313 (-) False dazl
XM_043217237.1 mRNA upstream 67494 16006305 ~ 16011143 (-) True dazl
TU197117 other downstream 13155 15922223 ~ 15924285 (-) True npy
TU196955 other downstream 276720 15659919 ~ 15660720 (-) True G133373
TU196948 other downstream 288861 15644862 ~ 15648579 (-) True LOC122323308
unassigned_transcript_2196 other downstream 552174 15385195 ~ 15385266 (-) True trnap-agg_22
TU196741 other downstream 567704 15366434 ~ 15369736 (-) True G133217
TU197532 other upstream 342146 16280957 ~ 16508560 (-) False mbpa
TU197530 other upstream 413058 16351869 ~ 16508560 (-) True mbpa
TU197533 other upstream 420980 16359791 ~ 16508560 (-) False mbpa
TU197531 other upstream 562134 16500945 ~ 16508560 (-) False mbpa
TU197668 other upstream 918168 16856979 ~ 16869564 (-) True G133834

Expression Profile