RNA id: TU197668


Basic Information

Item Value
RNA id TU197668
length 6922
RNA type TUCP
GC content 0.43
exon number 8
gene id G133834
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 16856979 ~ 16869564 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCGTCCACAAAACTCGTTATGGTGTTCGCTGCTTTCGACGAGCGGAAAAAACTCGCGTTCAGTCCCAGTTTCTCGGCCGCGGAAAAGGTCTTGTAGATGGAGATCATGTAGTCGTGAGGTTCAATCGTGTCCTTGATCGCCCGCTGTGACTGGACGTCTCCTGATAACGATGATGCCGACGGTGCGCTTTTGCCGTGTCTGACCCTTCTGTGGCCATCAGCGGGAACAGACTTGGACACTTTCATGCCTTTGGATGCGCTTGGAAACAGAGGATTTATGGGGTGAAcacaaagaaaatgcaaaagtaaCGTAAAAGTCAAAAGTACCCCCGAGACTCCGCGAGAACGCATCTTGCAGatgcacaagaaaaaaagaaggaccTGCTTGGGGAAAAACACGAACAcatcacatgtgtgtgtgtgtgtgtgtgagtgtgtgcgtgtgtgtgtgaaggagcgCAGAATGAGAGCAGCTCCTCTGAAGAACTGCCTCCTTAAGTACCGTCATGACATTATTAGCTCAACTCAATGCAAACAGCTAAAACTCAAAGACCTCAGCCTCCTgctcagctttcagatgatgctaCCGTCCTCCACGTCggagtcatttttaatatgctcGATTAACAGCAGAACGTAGATCAgtgttgtatgttttattgcTTTGGTTTAGAACCAAGGTAAAGTATAGCGTTTTAAATACGGATGGAACTGCTGCGTACAATacgaaaaaaaaactacaaaataaaagctgcgGAATTTTGCacgtgttttgtgtttattacgTTCGTTACGAATGTGAATGTTTCCCTCCCAAAGTTCGGCAGGTGTAAGTGTGAAGATTGAGCTCTGTGGACTTTATCTCCCTCTAGCGggttgtttctttctttcaacgCATCCTTCCaatgttttaatgtgtatataaaatgtctatatgtagaaataaaatgtcattataaatcagagaaattatgtgtttaaaaaataaaggaatatttgtttttttaagggcAGAATCGCCCtgttatgcatgtatgtgtataagctttgaatattattgttgacatttaaaatcactatgaaatcaaaactgagaattcttgtttttatgtaacattGCCGTGTTTATTATACCTCATATAATGTGCATATCATTTTTCTTAATTCACATGCTCTCATAATCTGATACAATCAATTCTcaccctgttttttttcttattcagaTGCAGTTTTACTTGGATGCACAGTATCTTAGAGTAGGTAAAAAAAGACTATTACACCtttcatttcatgctgacttcaCACTGTTActttatatagaaaaaaacattatgcaagAACTTGAAATTTAGCTTAAGCATATAGATATAATGTTGATAGGaacagatttaaatatttaatttagttaagtTGTTCATGttctacatttattataaatcaatGTGCTCAATTTATAGTTGTGGCTTACAGATCATGATCACACGAAAAACAATAGCAGTTTATAGACaaagacatatatttttatagatatatttataggAGAATACTTTGTGTTGTGATTTATTTAGGGTCTCATGAGCAGAAGCAGTAGACCACACAACAACATGAGCAGATACACAGACTGCGACGAGACAGCTGGACTGGAGTCAAAGATGCTGCCACCGCCGCCGTTATCCTCCGTGACGACGATCACAGAAGACGGCGTTGTAGCAGctctgagagagaaagatctGGACTCAGATCTCCAATCATTCAGAGTAAAGGCCAACTTCAAGTTCTCGCCTGAAAGAGGCAGAAGGagaaaaatgactgtaaacacTTACTTATATAATAACAGCTGACAGcgaaccccccaaaaaactgaatttgtgCAACAAAGTCAACCCACCACTTGTAAAGATGGCCAAATCTGTGTAATTGGCCCAGCAGCCACTGAATGGGATGGTGGTGTTTCCTTGAAGGCCTTCTATGGGATTTCCGTTAGCGTCTTTGAGCACAGCTGACATGGTCAGAGTCGTCACGCCCACAGACACGCAGTCACCCTGAAAACAGACACGCAAACATGCTCTTCTGGTTCGATAGCAGGTGCAGTTTTCTAGTAATTGCCTGGAAACTGGTTTCGGGTGTTCTTAAAGAAGTCTCACCGCTGTGTCCACAGCCATAATGCTGGGTTGCACACTCAGGGGCCCAGGGGACAGTCCCGCCACAGGCTGGACCACCACCTTCAGGGACGAGACCGTCTTCACCACCGCCACCTGCTGGTCTTCACGGGTCACTTCCTGAGTGGCCACcttaaagagagagacacagttAAAATAAGGGAAAAGCCACATGAAGTttataaaaagGATGGGTCGCTggaagaaggaggaggagggatGATGCCCAGGGACGACACATTGAAGCCGATGGACTGACTCAGATTGCCAGAGACAGCAGCGCGGCCCAGATCATCAGCAATGTTCTTCAGGACTTCAAACTGTTGGTCTTGTACTGCAGACGGAATAAAGCCAGATTGTTGACCAGATTATCCCCGAAGAACTCCTCCTCGGTCATGGCTGGGAGATTGAAGGCCAGGAACAGAACCGGAGAGGTGCGGATTTGGACCGGCTCTGAGCCACGAAGAAGTATGTTCATCATTTTGTAGTTTTGGTCAAAAAAGTTGGAGCCGTGAGTGGAGTTGAAATCAGGGACGTATTGACCTGATGAGTGTTAAGAggatgtaaaatatgaattataatcTGTGCAAAAATGTTGACAAAATGTTGGTCCTCTATCCTGCAGGGGGTGGTGTTTAACACCAGTTTTCATGCTGTGCTTTACCTGTGTCCAGCATTTAGCAGCATAAGTCTCAGCTTCTGTGGTGTTGTGCTGGTGAAATAGATGTCAAAGGATTTATTGGTGGCAACGATGGAGTGGAATAGAGATACACGTTTCTGACACGTGTAGCCGGCACACCAGCCGTGGTCTTGTGGACCTGTGACGAGATATTTACACGAAGCTGCCTCTGAATCCGTACCTTCTCCAACGGTGTAATGGATCACGTTGTCTTCGATACTCAGCTCATCTGTCCCAAAAACACCAATAGCAGGAGCAAAGCCATTGTGAAAAGCACATCCCTTGATTTATAAAACACCAGAGAGTATCGTGGGTCGGAGATGTCGTTCCATCCCTCCTGCCCGGTGTGGTAGAACTGGACGTTTCTGATCTGGGCTTTTCCTGTGACGCAAATATCATCagcattaatgatttttttaatccttATGCTGTGCTAGAAAGGGCTGGTTAGCCAATGATGATATGTGCAAATATTatactttcatatttaaaacagtttttttttttttttttttttttaattctttctcttatttttttccattagtGGAGTGGTTTTTTTGTAGGATATGTCCTGCTTGTACGTCAAGACTGAGGCCCAGCGGTTTATACCTCTGAAATCAATTCCTCCGCTAAAGATAAAGGCTGGTCCAGAGTCAGCGTGCGGCCATAATCTGTGACCACAGTGATAGTGCGGATTTCTGTCTGCCAAGGGTCATAGCTGGTGGtggacagcaggatctgatccCCAACCTGGAGTCCACAGATTCCTGTAGTGAGATAGTGCTGTTTCCTGCTTGGGACGTGCTAGCAAGCTTGGTGTGATACACATTGTGTGGCATGCCATACAGATCAAGAGATCCAAACACACCTAAAAGACAAGGTTTCTACTGAAATCAACACTTTTCTAAGTTGGCAGTCAATTAATATGAACATCTCTAATGCAAATATGCTCAATAAAGATATCTTTACAAGATACTTTGACTTCATTTACCCAGCACTTTGGAGCCTTGGTTTAATCCAGATGGCAGTAGCCAGTCTGGTGTGGAATGGCTTCCTCTCAGTATGATCTGTAGTTGACCTCTGAAGGGTTCATCAGGCCAGCCAGCAATCAGACGTCCACCCTGATTGAGCGAAACGTGTACAGAGAGAGTTGAACAgaattaacaaaattattacACATGAGGAGTCTGGTTCTAGATGGCGTAATGAGCCTAAAATATCTATACCATGTATGTCTATGAATGTAgtttttgatgtatttactTGAATGGAGATATATGTGGCATTCAGAACAACGTTGTTGTATTGAGAAACGCTGCGGGTGGAGGTGCCATTGTTTATGTCCGGAATCTCCAGAACTCCAACTATTTTCAGCTTGTTCAGGGAGGGGACCACAACATCCACAACCATCCAAATGCCTTTTAGACAGAAAGAGgttttgataaaataatttaattttttcctttttatcttTGCATGAACTTTGTGACCTTTAAAGGTGCTTACCAGCTGGAATGATCACATCAGAGCCTTCTTGTGGCACATTGAAGTTGTTCACTGAGCTTGACCTCCAAAATGATGTATTTGACCAGAGGCTGACTCAAGCAGgatatattttattagcaaagaaaacagatgaaatatataataataaaatgctgaaaGTGTGTGGTAACATACACATAGTTTGCAGGCCTGCGGCTGGTTGTGTTGGATGTATTGGCTGGCGTGACTACAGGACCAGGGAGTGGTTGGATACAGTTGGGATAGTAACATTGATATACTCTGAAGTCCAGCGATCTGTCTACAACTGAGCGGTCCACACTGTTCCTCTTCCTCCGGCTAACAATTCGGTCTCTTCCAGACACTGTAGACACAAAATTCGAAATCTTACTACTACTGAAATAAATAGACTAAGATAGAATAGAAAGACAGCATGgctaaaaaagcaaaaaaaaatttacccATGTAATAGACGTCTTTGGATGTTTTGTTAAAGTACCAATCCCCGTTTACATTCGCAGTGGGGTTCAGAGGTTGGGAGGAGCCATTCCTGTCATCTATGATGCGGAACCGGTCAGGTGTCTGGGTCAGGTTGTGGTCGATAATTACATAATGTTCTGGCTGCATTTAAGAAAGAGTCAGATTAACATGTTGTGTATTGCACAAATTCTACATTTAGCATTTAAGCCTTCTGGAGTAATGCAATAAGTCAGGGGTTTGTTCATGTCAACTGACAATATCTACATCATTTTAAGAATCTAATatcttaacaatataaaatgctaattttatcGCAAATCATGCTTTATTGGAACAATAGTTATTTTGAAGATGTATACTGGATTATTGTGTAGTGTGCATACTTTACCCGAAAGCCGTAGACCATTCCATTGTATGAAATGTTGGTTATCTGGGATGCACCATCAAAGTACCAGTTGTATGTTTGGCCTGTGGGCACCATTGCCATCCAGCCAAATGTGTGGGTCACCAGTTTTTTGAGAAAAGGAAGCACACATGTCCCTAAAGAGAGATATGATACTGAGATTAAGTGAACTAAGAAGGTTTTTCTAAACATCACAGCTCACttcaacataaaaaacaatattccctcaaatgaaattttttgttattttttagcTTTAGATCAATTTTTGAGTTtcatacacatttaaattagCTCAATTGTCCAGAGTTTATTATTTCATCATACCATATGAGTTGGTTAGAATGACATCTTTAGACACAAGTGAAGGCGGTGAGGGATTGACGACGACCATGCGGTGGAAGTTAATGGTGTTATCACATACTCCAGCAGGAACGCCAACACTCCACTCTGTTCTTGGGAAGCAGCGTCTTGGGTCGAGCAAGTTAGTCCACGCTACCACCTTGTAACTAACATTGCCTTTTCagaaacacaatatatataaataaatattcagtctttttttaattactaatactttttttgaaGCTGTTTGCAccatgccaataaagaacccaTTAAAATCTTTCACAAATTATGTATCTAAATACTGTAATGTCTGATGTTTCTCTACCTGTTAATGACCCATCAGTATCTACTAGTGCCACCTCATGCTCCCATCTGAACCAGGCCTTGTTGGGTGACTGATAGTACTGGATCCCACTGAATCTCGCGCTCCAGCCTCCACAGCGGAAAATGCAGGTTCCAACAATTTCTGCCACCCCGACTGCAGCACACGACGGACGGTCAAAGTTCACAAACTTGGTGTTGATGACGCTCATACCATCATCCAGAGGCAGGACAACACCACGAGCGGTGCAGTAGCTGCTCCCCAGTCCCAGCTCATCCACATGGCCCACCATGGTGCTGTTGACCACAGCAGCCCCTCCATCCAATCCCCATCCGCTGACGTACTGCTGGATGATCCTCTTGGACTCCACTCCTGCCTTCTCGTTATTGACCATCAGGAACTCGCTGAACTGAACCGCTCCTACATTCACCCACTCTGCACCTTTCTCGTTGTTCCAGGAAGTAAACCGGCGGAAGACTGCTGGTGCCGGTGTTGTGGAGCTGCAGCTGCCAGTACGCACGGGGAAAAACTCTTGGAAGATCCACAAACCGAACCAGCCCTGAGAATGCACCGTATTGTTGAAGAACTGTCCCAGTGGTACTCTCTTCTGACAGATGTTGGGGTTATATGAAGGGCCATCAGGATTATCATGCATACGATACCAGAAGCCGAAGTGCGTTCCACCAGCTGCGGCATTGTGCCTAATGGTGTTATTAGGGTTGGTGACCCAGTATGCAGCTGGAGTGACGTCGTCATTTAGTAAACTGGTGCTCTGTTTTACAAATACCGCCAGGTTGTACTGAAGGATGTTGCCAGTCTCAATGCCGTCCTCGATAAAGAAGGCCCCACCCATGATATTGTAGATGACATTACGCTCCACCAGAAGGTTGTGGGTGTTATGAATGGTGACAGCACGATTGTAGGACTGGTGGATGCCACATCCCCGCACATATGACTTAAACTTAACATCACCCATCAGATGCCAGTGGATTGGGTAGCGTCCCAGACGGAAAGCCTGTCCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197638 lncRNA downstream 157072 16699689 ~ 16699907 (-) True G133812
TU197602 lncRNA downstream 254443 16571601 ~ 16602536 (-) True G133783
TU197566 lncRNA downstream 295003 16560106 ~ 16561976 (-) True G133775
TU197565 lncRNA downstream 297148 16559417 ~ 16559831 (-) True G133774
TU197563 lncRNA downstream 298529 16557441 ~ 16558450 (-) True G133772
TU197671 lncRNA upstream 8100 16877664 ~ 16882412 (-) False LOC122323645
TU197712 lncRNA upstream 103942 16973506 ~ 16978942 (-) True G133856
TU197725 lncRNA upstream 104467 16974031 ~ 17041793 (-) True G133865
TU197704 lncRNA upstream 147973 17017537 ~ 17020967 (-) True G133852
TU197741 lncRNA upstream 153682 17023246 ~ 17024514 (-) True G133879
XM_043218519.1 mRNA downstream 25232 16814826 ~ 16831747 (-) True nudcd1
XM_043217301.1 mRNA downstream 60459 16793249 ~ 16796520 (-) False LOC122323461
XM_043217300.1 mRNA downstream 60462 16793249 ~ 16796517 (-) True LOC122323461
XM_043218348.1 mRNA downstream 73754 16774625 ~ 16783225 (-) True eif3eb
XM_043217267.1 mRNA downstream 84849 16686125 ~ 16772130 (-) False pleca
XM_043217586.1 mRNA upstream 32206 16901770 ~ 16944523 (-) True grb10a
XM_043217990.1 mRNA upstream 89587 16959151 ~ 16966115 (-) True si:ch73-109i22.2
XM_043217989.1 mRNA upstream 89587 16959151 ~ 16966109 (-) False si:ch73-109i22.2
XM_043217318.1 mRNA upstream 172411 17041975 ~ 17042989 (-) True msmp2
XM_043217136.1 mRNA upstream 178975 17048539 ~ 17051619 (-) False si:ch73-347e22.8
TU197532 other downstream 348419 16280957 ~ 16508560 (-) False mbpa
TU197530 other downstream 348419 16351869 ~ 16508560 (-) True mbpa
TU197533 other downstream 348419 16359791 ~ 16508560 (-) False mbpa
TU197531 other downstream 348419 16500945 ~ 16508560 (-) False mbpa
TU197117 other downstream 932694 15922223 ~ 15924285 (-) True npy
unassigned_transcript_2197 other upstream 13423 16882987 ~ 16883474 (-) True LOC122323321
TU197676 other upstream 13430 16882994 ~ 16883480 (-) False LOC122323321
TU197679 other upstream 16896 16886460 ~ 16887000 (-) True G133842
unassigned_transcript_2199 other upstream 20265 16889829 ~ 16890874 (-) True LOC122324114
TU197682 other upstream 20589 16890153 ~ 16890866 (-) False LOC122324114

Expression Profile