RNA id: TU197789


Basic Information

Item Value
RNA id TU197789
length 2385
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G133917
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17265664 ~ 17268048 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacttttcaatgatcttgtcACTTTATTCTTGAATTGTGCACTTTCACAGGTAACACCACAGGTTTACCATAgctgactaaataaataaataaatatatgtattcgtaataaaaaataaaactgtaactgAAGCTATAATTGGGGTTAATATTGAAAAGTACGCTTTCCTCATACATTTTTGATTCTAATTATGTTGATTTTGCTTATCTTCCCATACCTTCTTCATTGACAGAATAGCGGTATAGTAATTCTGACAGAATTACATAAATTCTGTCaggacagaaataaaaatagatacacaaataaataaataaataaataaaaactacactaataaaaataaatgtctgaTGAAGATGCATCTTAATAAACCATTTTCACCTTTAGATCAGCAAACGTCTCTTCACCAATCttctcttatttttaatttactgcaGTAAACAATTGACGACAAACATTGTGCATGATCGCCACTTGCTGACTTCAGCCGAATTGTCCACAAAACAGATCCATTCCAAGCCAAACAACATAttcaaacatgtaaaaacaatcaataatacaaaccaatcaattaataaatatgcatgtaagTAAAAAGCAATGTGGTCGTCAAGTATCAGGACccttacattttttatacatcCCATACCTCTTCATATAACATAACTaactaatgcatttaaaatgtttatgactGGAATGTCTTTTTTCGTATTATTCACTACAAGCCACATTTCGATTTTCCAAAATGCATAATTCTGTGCGTTGAGAAAAATGCTTAAGGAAACTTTTACAGTGATGCAAtagaaagcaaataaaacaacatcaacaacaaaaacaaatatattcaatgtaggttaaacaaattaaatgccAAAGTGTGTCTCTTATTTGCCGGCTTCCTTGGTTACTCAGATGAGTTTGGGAATAGACATCTGATTGTTCACTCTTTAATGCTAGATGTTCATTCAGGTATgttatcaaaaaaaatatacactactgctgatattttcacatttttatgatcagcaaggctgcatttatttaattaagtctTAATTAAAAgtctctattaaaaaaaagctgtgctgcttaatatttttgtgaaaaaaagtctttaatgaACACAACAGCATgtattttatcaatatttattatatatggaATCGTATGTATCGATGTAaaagtttttactgtcacttaatCAATTAAATGGATCCTTGCTGAACTACAGTATAGTACATAAATAACACTGACCCGttcttttgaacagcagtgtatatCCAAAATCTGCTCCAGTTTATCTAAAGCCTTTAAGAACGACACCTTTCtgaattttaaaacatcatcTGCTTCGATTTCTCAGTCCATCATATCGGAAAGGCCGGGTAAGcatgcttttttcccccaaaacataaagtatattgttttatatacttAACAGTATATTGTtgctcattaatatttaaatatttgcacacacttatacacacacacacataatcaacTAGGATTGATGAAGGGGATGGGGAAAGGAGAAGGCTTTGAATTAATGGATGCTGAATGGAGAACTCAAAAAATGCTATTGCCTTTCCCAGCCGCCCCAGTGCCAGTGCTCCAAACCAATGGAGGGCGCTGAAGAACTGGAGCTTGTTGGGTAACCGTTCCTGCGAGTGACATAGGAGATAACTCACCAATAAGAGTGCCTGCAGTGCCGGGTCGTACCATTCTAGGGTTAGCCATGGAAAATCCCATGCTGGACATTGTAAAAGCTGAATGGCTCGTGTTTTGGGTTGGAGATGCCATACGGGCGGCAGGCACCCCAAAGGCTGTGTTTAGAGGGGACGGGCCACTGGAACAGGGTGGCATGGagttaaaagcaaaataatttggGTTCGAAGGCTGTCCTGTTGAACCACTCGCATTGGACACGTTGCCGCCCAATGGCCAGGTCATACCTGCGGCTGGCAAAAGTCCTGGGAAGGATGACAGTTGAAAGTGCCAACAAAAAGGGATGAAGGGTGACGGGGAGGAAGGGAGAAGGGAAGTGGATAGCATATAGAAGCAGGGATAAAGAAGGGTGAGATGGCATCTACATCGACTACGTACAGGTTATGTTCCACATGACTATGAAAACACTGAGTCACAAAcactcaaaaataaacagatactatacagtctctctctttctcagttgCTCTTATTGtcattgtctctctctttctctctcagcccTCCTTACCCGGGGCTTTTTGGGTGGGGATGGCATTGAGGGGGGGCTGTTTAGGTTTGGGCTTGACTGACATAAGAGAGTCCAAGTCCACCAAAGAAGCACCATCTCCAAGGAACGACGCCGACTTTTTGGTCTCATCGGCAGATTTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197792 lncRNA downstream 4165 17260710 ~ 17261499 (-) True G133920
TU197791 lncRNA downstream 14360 17248684 ~ 17251304 (-) True G133919
TU197779 lncRNA downstream 50552 17214695 ~ 17215112 (-) False LOC122323474
TU197774 lncRNA downstream 97556 17167025 ~ 17168108 (-) True LOC122323277
XR_006246988.1 lncRNA downstream 98562 17164694 ~ 17167102 (-) False LOC122323277
TU197844 lncRNA upstream 19619 17287667 ~ 17289380 (-) True G133951
TU197866 lncRNA upstream 57283 17325331 ~ 17345216 (-) True G133970
TU198250 lncRNA upstream 321948 17589996 ~ 17594324 (-) True G134245
TU198258 lncRNA upstream 330016 17598064 ~ 17670694 (-) True G134247
TU198267 lncRNA upstream 352126 17620174 ~ 17645633 (-) True G134252
XM_043218073.1 mRNA downstream 6531 17255045 ~ 17259133 (-) True necap1
XM_043217163.1 mRNA downstream 38171 17223716 ~ 17227493 (-) True LOC122323367
XM_043217328.1 mRNA downstream 46874 17215051 ~ 17218790 (-) True LOC122323474
XM_043218221.1 mRNA upstream 6669 17274717 ~ 17280868 (-) True rcvrn3
XM_043218353.1 mRNA upstream 216898 17484946 ~ 17492735 (-) True cacng6a
XM_043218352.1 mRNA upstream 216898 17484946 ~ 17492671 (-) False cacng6a
XM_043217216.1 mRNA upstream 258364 17526412 ~ 17534108 (-) False styk1a
XM_043217217.1 mRNA upstream 258364 17526412 ~ 17532705 (-) False styk1a
TU197783 other downstream 46915 17217788 ~ 17218749 (-) False LOC122323474
unassigned_transcript_2205 other downstream 364888 16900705 ~ 16900776 (-) True trnap-ugg_15
unassigned_transcript_2203 other downstream 367063 16897995 ~ 16898601 (-) True LOC122324115
unassigned_transcript_2202 other downstream 368521 16896108 ~ 16897143 (-) True LOC122324113
unassigned_transcript_2200 other downstream 373083 16891692 ~ 16892581 (-) True LOC122324112
TU197841 other upstream 15284 17283332 ~ 17284744 (-) True G133949
TU197840 other upstream 62649 17330697 ~ 17334234 (-) True G133948
TU198224 other upstream 345432 17613480 ~ 17616238 (-) False LOC122324164
TU198368 other upstream 661641 17929689 ~ 17935436 (-) True s100a10a
TU198369 other upstream 661641 17929689 ~ 17931750 (-) False s100a10a

Expression Profile