RNA id: TU197844


Basic Information

Item Value
RNA id TU197844
length 1600
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G133951
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17287667 ~ 17289380 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAGATGCGTTTTAATAACAGCAGGGCACAGTTTTTACATGAACagtgaaaatgcaaaataatagggtcacaatcacaaaaacatcaataaagcCTTTAAACGGTTGGTCCGATGTATGAACAATTTTAGCATTACATTTAATCTTACAGGCATACCATCAACTAGTAAGGAATGCCGTGaacaacatttaatattttaaatcaataaacaatCTCTAAGTTTTGACTTTTGCTTGTAACCTCCTGAGTAGGACTCGTAAAACGTCTCCAATATTATACATTGACTTTTtatacacaatttattttgccattttacaaaaacaaaaatagtccCATATTACGACGAAAAGAAGGGTTTGCATTTCTATAAACAAAGGCTTTATTTGTGGAATCTGAAATGATTTGTGCCAACAAGACTGCACCAGAACTTCAAACCTAGTGACTTTAATAAACAGATGAACACTGAAACTACTTCTTTGAGTTTTTCTCACTAATTGTTTAATTGAAAGTAACCACAGCTTGTTAAAGCAAAGGCCACTAAtgaaagagttttgttttttttttccagcaaattTAGAACATTTTGAAACTCTGAAGATGATGCAACAAGCTGAGAacttcaattattattattcaataacCTTTAGCCCGATTCGTATCACCCAAATGTGATCACAAAGGTCAGAATACGAAAGAAAATGGCACCTTGTGTGATCCCcatgaaaatcaaacaaaaagtacattttaattgaagGACGGAATTTACAATAAGAATTTGGGCATAtctagaaaaatagaaaatgtaaccCTTCACATACAGTGGCTGACTACAAATCTCACAAATGTTCTTCTCCCTTTATTTCTTCACTCACAAGTTCTTACAGTATAGTATTTGGCCAAATAGCCATTCCTGAAATctacacattttgaaaaatgatcgTTATTAACAGAGTTGGCAAAGTGTTgagatttgaacattttttcccctccaaAAGTGTcgatctagaaaaaaaaaaaaccctataaaGTGTCAATGAATGGACTCCAAATACCTATAAATCAACAGTGCAGGCTTCTCCACCCCAAAAAAGGACTATCTGTGGAAATTTAGTGTCTGAACCTGTACGAGATGGGCAGCAAGAGGTTGCTCTTTTTCAAGGCCTGCACCTTAGCATGCGCGCTCTCGTCAAGAGCTTTATAGCAGCGTCTTGCATAATCCAGGAGCTTTTCCTTGGAGGAATCGAACTCACCAACTTCAGATACCTTCTCAGGAGCAACCAAAAGCATTTCAGCAATAGGAGTGGTGGAGGCCACGGTGTTACGGTCAACCCCATGGACCTGGAACGCTCTTGACATGCTCTTCAACTTTTGATAGGTGACAAGGATCTTATTCTCTTTGTCTTTCCATGCTTCGCGCAATACGGAAAACGCGTCGTCTTTTCACCCTTGTTTGGCCACTCTGCCTTCCTGAACGGCTCTTACGTGAGTTTTTACCGTCTGAATCCTCGGCATCATCATCTGTAACAACATGCTCCTCTTCCACAAAATCTTCCTCTGCTATATACTCTTCCTCCTCAATCACCTCCTCGTCTTCTTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197789 lncRNA downstream 19619 17265664 ~ 17268048 (-) True G133917
TU197792 lncRNA downstream 26168 17260710 ~ 17261499 (-) True G133920
TU197791 lncRNA downstream 36363 17248684 ~ 17251304 (-) True G133919
TU197779 lncRNA downstream 72555 17214695 ~ 17215112 (-) False LOC122323474
TU197774 lncRNA downstream 119559 17167025 ~ 17168108 (-) True LOC122323277
TU197866 lncRNA upstream 35951 17325331 ~ 17345216 (-) True G133970
TU198250 lncRNA upstream 300616 17589996 ~ 17594324 (-) True G134245
TU198258 lncRNA upstream 308684 17598064 ~ 17670694 (-) True G134247
TU198267 lncRNA upstream 330794 17620174 ~ 17645633 (-) True G134252
TU198296 lncRNA upstream 499647 17789027 ~ 17789326 (-) True G134272
XM_043218221.1 mRNA downstream 6799 17274717 ~ 17280868 (-) True rcvrn3
XM_043218073.1 mRNA downstream 28534 17255045 ~ 17259133 (-) True necap1
XM_043217163.1 mRNA downstream 60174 17223716 ~ 17227493 (-) True LOC122323367
XM_043217328.1 mRNA downstream 68877 17215051 ~ 17218790 (-) True LOC122323474
XM_043218353.1 mRNA upstream 195566 17484946 ~ 17492735 (-) True cacng6a
XM_043218352.1 mRNA upstream 195566 17484946 ~ 17492671 (-) False cacng6a
XM_043217216.1 mRNA upstream 237032 17526412 ~ 17534108 (-) False styk1a
XM_043217217.1 mRNA upstream 237032 17526412 ~ 17532705 (-) False styk1a
XM_043217215.1 mRNA upstream 237033 17526413 ~ 17533532 (-) True styk1a
TU197841 other downstream 2923 17283332 ~ 17284744 (-) True G133949
TU197783 other downstream 68918 17217788 ~ 17218749 (-) False LOC122323474
unassigned_transcript_2205 other downstream 386891 16900705 ~ 16900776 (-) True trnap-ugg_15
unassigned_transcript_2203 other downstream 389066 16897995 ~ 16898601 (-) True LOC122324115
unassigned_transcript_2202 other downstream 390524 16896108 ~ 16897143 (-) True LOC122324113
TU197840 other upstream 41317 17330697 ~ 17334234 (-) True G133948
TU198224 other upstream 324100 17613480 ~ 17616238 (-) False LOC122324164
TU198368 other upstream 640309 17929689 ~ 17935436 (-) True s100a10a
TU198369 other upstream 640309 17929689 ~ 17931750 (-) False s100a10a
TU198381 other upstream 721502 18010882 ~ 18011399 (-) True G134318

Expression Profile