RNA id: TU197866


Basic Information

Item Value
RNA id TU197866
length 9309
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G133970
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17325331 ~ 17345216 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCCCTCCACCTCTAATAGTGTATGGCACTGCATAGGGCATGTGCCAACACATGTGAGCTGTAAACAGCCACATCCAGCAGAACTAGGCACCATGGCACCAGGTGCGTAACACCTGGTCGTATCCTCTCATTTGatgtttataaatcatttaactTTCATGCCATAAATAACCAATTAACCCAATCTGCTCACCGTCACGAAGAGGCAAAGCTCTGCTTCCCATAAACATTCAGAAGAAACACTCCGAACGAAGACCGTACAttttctatctttttatttgctttctgAGAGACTCAACATTTCTGTTGactcagaaaaagaaaacaaaaaaaaagttacgtaTAATTGAGAGTAAACAAAGGCTATACCGTTAAGCTCTGAGTACTGGGGGGGGAAACTAGTTTAGAGAATAGATTGTTACTGTTCAAATTAGTTCACTTTCACTGGTATGCATCCATCATTGCAGCACAAATAAAGTTACGAAAATAcataatgaatgcatttgtaGAGGATAGAGATGCTACCATTACAACAAAGGTGCTACCAAAAAACAGTTCCATAATCTAGAATATTCTTCCCCTTTGGAGAAACCGTGTTAAGAGATCCATGTCGATAATGGATGGTTCTTTAGGTACAGGCTTGTTTTCACATCAACAgactcttttatttttatgaggcaCTCCCTTGGTTACAGTCTGACCATGGTTAAGGAGTTGAATGTGTGGCGCTTTCCACCAAAGTCCTTTATGCCTACTTTCACGTGATCCTTGCCttgaaaacatctgtttttaaGGCCTTCTGCTTTTTAAGATGTCAGTTTACCTAGTGCCTGTAACCTGTCACAACTGTTGATCTTTCAGTCTGGTCCTCTGCCTTCTGAACATTAGTCCCCTTTATTGACATTTTGATTCCTCTACTGACACGCCGACAAGCAAATTTGTGGCGCTGCAGGAGGGTGCTGTTCCAGAATCGAGAGGGACATTGAGAGCAAGAAAATGCTCCTTGGGACAGGTGGTGGGCCCGATGACGGAGAGCTGTCAGTAGCCTTCGAGAACGTTTTCCACAGACTATGCAGCGCAGGCGAGTCTGACGGCCGTGTTTTCTTGGTGGATGCCTGATCACACGGTGCACTGAAAGAGTTATGCGGCTTGAGAAAGTGGTAAAGGGACAGACAGGGCAAGAGTATGACTTTAAGGGAACGATGAGAGACCGCAGGCCTCTAAACCTTAACCGCCCCACACGCCATGTGCCTCCACCTACATTTAAACCAAGCCCTCCTCCAGTAAACTTGGCCCATTTCAGCTGAGCTATCCACTTCTTCCTCTTTAGCTGCTGCTGAAGCCTGCACTTCTTTCGTTTTAAATACATATGCCTCCTGGCAATTTCGTAAGCACTGAATCCAGCCATCATCTGCATGCTACTAGccagtttatattttttctttttttttttcttcttcctctggGTGACATCTCCCTGGGCCTGAGGGCTTTGCTGTAGATGTTGAGACTGCATGGAAAAGGGGTGCTGTTGCTGGTGGTGTTGAGAGTGCTGGGGTGGTGAAATGTGGATATGAGGTGGAGTGGAATGAACAGTGTTACCTGGAACCCCTGGATAAATTAACTGCTTCCCACCGATTTGTTGCTGAATCTGGAGGGGGGCCATAGGGGGGTTTGAGTAGTGCAGATGTTGGGGGTGTGAAGTCACATTTGAACTGTGATGTCCTGATTCTGGAGTGTAAAAGAGCGGAGAATAGCCAGCAGGCTGAGGATGCTGTGTGAGAGCGATGGTTGAATGGGGCTGTTGTACTCCGTGACTTCCACTTTCGGGTGTTATATGAAGGAGTGCATTGGTTGCAGCCTCGCTCTCGGAGACAGATGGGGCAGTTCCAATAGATTCACTTCCCGTTGGTTGCGTCGTTGGCCCAGTACGAGTCAAACCATGTTGAGATAATCTATGTCTGGTCAGACTGTTGGAGTAGGAAAATGCCTTACCGCACACTTCACATGAAAACAGTTTCTCCCCTCCGTGTTCGTGAATGGCTTGGTGATGGGCTGTCAAGTGGAAGTGATGGCGGAAAGATTTCCAGCAAATCTCACATGTATATAGCTTAGGAGGGGGTTGGTTGCTTGTGCTAGCGTTAGATCCTTGAACTTTATCCTGAGAATAGGAGTAATAAGCGCCAGGGTTGGTCTGATTGGTTTGATCGGGTTGATCTTGATTAGCAGGTGCCCCTTGATTTGTAGCAGATTTGGTTTTACTCCGCCTCGGCTTGAAATCTCCCCGTAGATGCAGTTTTTCATGCCTTTTCAGACTCTGTGCATATCCAAAATCTTTTCCACAAAGGGTACATTTGTAGTTCTTCTCCCCCGAGTGAACAGTCTGATGTTTGGTAAGGTGAAACGGCTCCCGGAAGTCTTTACCACAGATGTCACAATGAAACGGCTTTTCCCCTGTGTGCACGCGTTCGTGCCGACGCAAGGTTTCGCGTCTGCTAAAGCCCCGCCCACAAACAGTGCATAAATAAGGCCTTTCAGAACCATCTCCAGCAGCACCATTGCTTCTACGACGTTTCACTCCTTCTCCTGGAGCCCCACCAGGTCTCGGCTCTCTTTTCTGTCTGGGCTTGCGTGGCCGCTTGGGTTTGGCATTAGGATTGTTGGCATTCTGTGAGTTAGGCTGCTGCTGTTGGGTGGGGTGAGATAAAGGTATCATTGAACCACTCAGGCATTCTTCATTCCCACCATTTCCTGCGGATGTAGATGAAGAGGCACCCATAGACCCGAAACCAAGCCCTCCTAGCAGACCTCCGATAATGTCTCTCCGTTCCTCTCGCCCCCCTGTATTGTTCATCTCAGCAGGCAAGACAGAGGCGGCGGCAGCTGCAGCAATGGCAGACATGGCACTACTGGTGACTTCATCCTCAGAGTCATCcaaaagagaggagagaggcaGATGAGACTGCGGTTGGTGATGGTGCTGCTGATTTTGAGGGTGTGGATGAAGGGTGGGGGCTAAAGGAGCTTTTCTGAGGGCCGGACTCGACATGCTGTTGTTACAGGTGTCTCCAGAGTAGGATGGTGGGTTGGCCTGTTGACGACGATAATCTTCGACTCTGTAGGACGTTTGGTAAGGATCTCTTGAATACTCTGGATTATACTTCTCTTCAGTTTTTCCTACAGGATTTTGATTAACATTTCTACCCTGTGAATACAGACTGTCGCAAGACATTGCTGCTGTGCTATCCTCGTTTTTGCAAAATACCAATTCTTTTGTGTCATCCATTTGTCCACCTGCAAAGTCATTTTCAACCTTGCCCTCTACTGAACTTATTGAGCTACCATCGCTGCTTCTAGATCTCCTCCCTGGCTTGCCACAATTACCTGATGCAGCATGGTTAAGCAAAGAAGTGCTCTCTCTAAAGCAGCGGCCACAAGCAGGGCAGCGGTAGGGCTTCTCTTCGTGAATTTTCTCATGTCGAGTGAGAGACTCTCTGCGGTTAAATGAACGCTCACAGACAGAGCAGGCGTATGGACGAGCTCCAGAGTGGATAATGCCATGCTGAAGCAGGTGCCCTCTCTTCTTGAACCCCTTTCCACATTCATTGCAACAGTATGACTTATCTGGACTTGAGCAAGCGGAAGACATAGGGTCTGTGTTCTCATGCTGATGGTGAGCATTTTGTGAAATTCCATCTTGTGTTGAGTGGGGGAGATCTGACTGATGCTGATGACTTGGGTTTGCGTTTGTGCTGCTGTTGGGACCACCACCATCTTCCTCATGGCAGCGTATGTGTCGGCGAAGGCTTGGGAGGTGGGTAAAAGACTTGCCACACTCTCCACAATGAAAGAGAGGCTCTTGCTCTGGCTGTGTTATATTGGGAGTCATTGGTTGCTGATTTTCAGGTTTGGGGTTTTGAGAGATGTTTGATACGAGCACAGAAGCAGAATTTGAAGATGGGgcagaggaagaagaggaggagacagttgaagaagaggaggacggTGTTGACGAGGAGAGGATGGAGGAGGGGTCACCACCAAGACCCCTCATACCAACCCCTCCACCTCCTCCCACAAGACCAGAGGACCCATCATGACCATGTGCCCCAGAGCTGGCATGGCAGTTAGCACTGCTTGTACTGCTACTACTGTTATTATCTGTCTTCCTCTGGGGCAGGTAGCCAGCCATGGCTTTCTTTCTCCTGCTGCCACTACCTCCACTTCCTCCACCCCCAGATCCACTATCTCCTTTCCCATCATCTTTTGGTACGGAGAGATGGAGTGGAAGTGGCAAAGGCAGGCCTGCTTCTTGTTGCATTAGAGAAGCCAGCTGATTAGATGAAAGAACAGGGATACCTTGGAAATCAAAACCACCAAGAGGTGAAGGTTGGGGGGCAGGGTGTAGAGGGTGGTGTGGATGCGCATGGCTGTGAGGGTGGGACAACGCATGAGGTggaagctgctgctgctgttgctgggGCTGAGGAGTTGGATGGCCATGGGCATGGGAAGGATGGAGGGCTGGAGGAGGAGCAAGGCCTGTATTCGAATCCGCAAGGCCGAGATGATTATGGGGACCCTGCTGAACTAGAAATTGTTCTAAACTGGCGTTTGTGGGCACTCCAGAAAACAGGTATTGGTTTGCAGCGAGCATGCAACTAAACTGCTGGTGTAAACTTCTTGCATCAGACTGGGCTCCGACTAATCCAGCCACTGAGCTGCTACTGCTGGGGGGATTATTAGAAGTGGTGGTTGAACTTGAAGGGGAGGGCGATGATGAGGATGGCCCAGGAGATGGCTGAGGAACAGAGAGCCCAGGGTGCaagggtggtggtggtggtgctgAGGTTACAACTCCTCCAATTACCCCAGATCCCCCTCCAGTACTTCCCCCTGCAAAATCGAAACGCCCCATTCCTGAGTGAAGCTGCTCCTGTGCAAGAGCAGCCTCAGCAGGGTGAAATGTGCGTAGGAATTGTGGATAGCCAGAGGCGGAACTGCCACTCCCGCTGCTGCTGCTCATCTTGCTTGATTTACGTGTGCTTTGTGATGATGAGGATTGAGTTTGTTGTGGAAGGAGTGAGAGAAGGAGGGGTGAAAGCCAGAATTATTGTGCTTGCTGGACAGCAATGTTCCTGTTGAGGCCAGTTGGGTGTTGTTCATGCGTGGAACTCGCTCTAGGAGAGgagaacaaaacacaataagACAAACAGCAACAACTGATGTTTTCAAAGAATATCTATCTGGGTCGACTGTAGAATATGGGTGACTGGAACACTGAAGCTGCATCCCAAATCGCTAAACGACAATGGCAGATGTCTGAAAATTACTTGTGGAGAAAAATACAATGGAGCTGAAATATTTGTGTAGAGATGTGCGACTACAATATTGTCTTATTCGTCGTTCCCTTAAATTTCTTATATGCTTATATAATGATAGTATCCTTACTTATGCAGTGATTTGTTCCACACTTTTATAAGTAATTTGCAGTGCACATACTACAGAGAGAGTCCCTCCGGAGCAACCTTGGGTTAAGCACTTCAGATTAAATGTAGTCCAGGGCACAGTGGACACAGGGGAACTCAGCAACTATATAGTTCATAGATCATCCTTGCTGAGATTTGGACTTAAGTACCTTGGAGTTAGCAGTCCAGTTCAGTTCACCGGCTCCAATTCACCATGGCATGCAACATTTGtcaaaggcttttattttttacttgagAATAAAAATTGTTACGTTTCTCACATACATGTTACACAATATAGCATATAAAGATgacactggaccacaaaaccagttataaGGGTCAgtttgtaaaatgaaatgttgaagatttatataatatgaaagctgaataaataagctttccattgatgtatggtttcaAGAACTATTTAATAATGTAGAATCTAAAtggggtaaaaataaataaataaataaaaacctgaaataATGAGAACATCTGCTTTAAAGTTATCCAGATGAAATCTGTAGCAACATGtattactaatgaaaaatgtatttttttttatggtagtaaatttacaaaatatctttatggaacatgatctttacttctTATCCGAAAAATGTtcggcataaaagaaaaatagatcattttgaaccatacaatgtattgttggctattacCACAAATATACCGGTGCTACttataactggttttgtggtccagggtcacatataatacataatatcaTATGCTATATTTAATGaccacataatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaaacaaagaaaacattatttataaatacttgttaataaacaaacttcctctttcagtttttacaattatttttccaTCTCCCACACTCTCAGAagcaaaataagaaagaaaagaaaagaaaagaaaagagagatcTTAATGATATTATTCTGTTTGGCATGCGAGACATTTAGAAACTGAAAtaagaatgcattttaagttCAACTGAAATTTCcagaatgaatttaatttaaggtAGCATttcaagaaattaatttttactttaaaaaagtaaagtgtCTGGAAGACagatcatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagacagatagacagatagataaagatTTTGCCAAAGTGAAAACAGAAGGTGGAATCCaaagtgtttttctagtttttatatttgttaaatatccATGTGCTTAATAGTACTGTCaattatttaatgaagtatatatatatatatatatatatatatatataaataaaacacaaacacatgcttgtatatatttaagtaaggtttatacattaaatatatgtatatgaataaataaataaatgtataaacaaatattttcaatatatataatatatactgtgtgtactaatatatacataataaatatacacagtacgcattcacatataaaataaagaaaaaacatttttacaacaattttagatgtgattattAGTTTGACAGAACTAGTGCttaagataaatataaatgagtaacatatataaacatgaagaaaagacactttttttcttcatgattTTGGCATTCTGCTACTATGCATGCCAGCACATTTACTGAAGCTTTAGTGACTGGTGCAAACAGTGCTGGGTGCAGGACAAACAACAAGAAAATAGCTGAGGGTAGCGACAGAGTGGGAGGGCACGAGCAAACACACTCGAACCAACGAGACCAAGCCAAAGCAAAGGCAGcgacaaatacacacagaaaaatCTGAAGCTTTCTTACTGGCGCTCTCACACAAGTGACACATTTGCACACTCTGCCTAAGCTCCTTGGCTTACCGATAGTAGCTGTGTGTTTAGGACTGGACCCAGTCTGGCCAAAACTGTGTTTCCCAGCTGCAAAAGAGCAGAGTGAACACTGTTCCACTCCCAGATCACAAAATGTGAGGCCTCTTagcatgtttaaaaatggttttcagtGGCCTGCACcccattttttaaaagaaatatctaGCAGTACTGCAAGTGAAAAACACGACGCAAAAATGACGGTCCGGTTAGAACTAATGAAACAGCTGCAAGCACTTATGTCAGTGATGCAGTTTTCTTGCTTTTACCACATTGCTTTCTTGCAGTTCAGTCATGTTTCAATAATggtgatctttttttttgtttttttttcaatattcttACAACTGATTGGTGCCACTAAAAGACTCACTGATAGGACAGACCACCTGcagcacatttaaaaagcatgtgtTCTGTTAGCAACTGCAGCCAAACATTGAAAACTTGAGAGTGAAAACAGACATATCATGATAAAATGGAGTCAATCctaaaaagaacagaataagTACTACAAACAACAAggactataatataataatatatattttttcaatgacAGTCATTTTTAccactaataaatattatatatacacaaaagtgataataaatgaatttataatgttgttacaaaaaaaatttggtaacactttagaataggtaacacttgttaactattaactataacatttccctcaataaattcttattttgctgcttattaatagttagtaaggtagttgttaagtttaggtattgggtaggattagggatatagaataaggtcatgtagaataaggcattaatttgtgcttaattagaactaataaatggctaatattgtagtaatatgcatgctaacaagCAATCAATAGGTGTAAccaaagatttctattttaaataaattatgttctttaaacttaatattaatCAAGGAAACCTAAAATATTGTATcatgatttttacaaaaatattaagatgcaCAACTGGCTTTGACTGaagtctaaaaaaaataaaataaaacctggAGTTCATGAGAATgagaatattttatgttttattagtttacaAAATTACTGatttaactgttaaataaatgcagctttggcgCAAGAGGCTTCTTTCCAAACTTTTACACATAAACTTTTGAACGTATAGTGTGAACGTGTCTTGAAGTGTACataacatttcaatttaaattcacTAACGACTCTGCcctgtaaaatgaaaagcatctGTTAATCACTAAATAGGTTTAAGACATAGCTCTAATTGTTGGTTACTGCAATCCTCAAACCCAGCAGATAAACAACTAAACAGTATTAcaagatttgttttattcactGGCCGCTGATTACTTCCTAAAAGCAGCCCCCGAACTGCATACATTAAGCGTTTCCATTTTGCATGTTAGTCTAGGATTCTTTAGCGTTAAAGGTGGAAAACACCTCCTCCTTTACTTGCTGCTCTAGTTTCATGTTGTTACATAGCATCTGAAGCAGAATTAATCTGACTCATTTCTGACACATCCTCTGTTCTACATTACCTCATACACTCAGGCTTGTCGATCTGTCGACTAAATCATGCCTTCAGATTTCATTTCTGCCCAGCTGATTCTACAGTTCAAACCTTTTCTCAATATCTGCCTATTCTTTCCTctgcaaatgtataaaagttGCGACTACATCCATTATGCCCTTTTAGCTTTTCGCTCGTTCTGCAACTCTCACGAGTGGGTGAGACAGACTCACTCCGGTTGTCTTTGCTCTGGAGGACGGGAGTGTAGAAGTTTTTCGACATCCGCCCCAGCGTTCCCTCACTGGAGGTGGCGGTTGTGAGGACCGTGCTGTTGTTCCTCTCTCCTTGCTGGACCGGACTGGACTGGTGACGCAGAATGTCCACCAGCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197844 lncRNA downstream 35951 17287667 ~ 17289380 (-) True G133951
TU197789 lncRNA downstream 57283 17265664 ~ 17268048 (-) True G133917
TU197792 lncRNA downstream 63832 17260710 ~ 17261499 (-) True G133920
TU197791 lncRNA downstream 74027 17248684 ~ 17251304 (-) True G133919
TU197779 lncRNA downstream 110219 17214695 ~ 17215112 (-) False LOC122323474
TU198250 lncRNA upstream 244780 17589996 ~ 17594324 (-) True G134245
TU198258 lncRNA upstream 252848 17598064 ~ 17670694 (-) True G134247
TU198267 lncRNA upstream 274958 17620174 ~ 17645633 (-) True G134252
TU198296 lncRNA upstream 443811 17789027 ~ 17789326 (-) True G134272
TU198298 lncRNA upstream 444335 17789551 ~ 17798825 (-) False G134273
XM_043218221.1 mRNA downstream 44463 17274717 ~ 17280868 (-) True rcvrn3
XM_043218073.1 mRNA downstream 66198 17255045 ~ 17259133 (-) True necap1
XM_043217163.1 mRNA downstream 97838 17223716 ~ 17227493 (-) True LOC122323367
XM_043217332.1 mRNA downstream 106541 17216069 ~ 17218790 (-) False LOC122323474
XM_043217331.1 mRNA downstream 107114 17215051 ~ 17218217 (-) False LOC122323474
XM_043218353.1 mRNA upstream 139730 17484946 ~ 17492735 (-) True cacng6a
XM_043218352.1 mRNA upstream 139730 17484946 ~ 17492671 (-) False cacng6a
XM_043217216.1 mRNA upstream 181196 17526412 ~ 17534108 (-) False styk1a
XM_043217217.1 mRNA upstream 181196 17526412 ~ 17532705 (-) False styk1a
XM_043217215.1 mRNA upstream 181197 17526413 ~ 17533532 (-) True styk1a
TU197841 other downstream 40587 17283332 ~ 17284744 (-) True G133949
TU197783 other downstream 106582 17217788 ~ 17218749 (-) False LOC122323474
unassigned_transcript_2205 other downstream 424555 16900705 ~ 16900776 (-) True trnap-ugg_15
unassigned_transcript_2203 other downstream 426730 16897995 ~ 16898601 (-) True LOC122324115
unassigned_transcript_2202 other downstream 428188 16896108 ~ 16897143 (-) True LOC122324113
TU198224 other upstream 268264 17613480 ~ 17616238 (-) False LOC122324164
TU198368 other upstream 584473 17929689 ~ 17935436 (-) True s100a10a
TU198369 other upstream 584473 17929689 ~ 17931750 (-) False s100a10a
TU198381 other upstream 665666 18010882 ~ 18011399 (-) True G134318
XR_006247044.1 other upstream 838925 18184141 ~ 18188021 (-) False si:dkey-266f7.5

Expression Profile