RNA id: TU198258


Basic Information

Item Value
RNA id TU198258
length 1954
lncRNA type read_through
GC content 0.34
exon number 3
gene id G134247
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17598064 ~ 17670694 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgttcttttttttttttttttttttttttAACGGCATCAGCACTTTATTAGAATCAGCACATGGTGGGCAAGCAgacatgctttaaaatgaaccaCGAGTTAGCAGCTTGGCTCCAAATGCTCAGGGACAGGAACTGTTATTTTATGCATCTCTGCAGCgcatatttacaaatgaataggttgcataaaacacacaatgtaGTAaggattttagttttttttttaagggaataACATTCACTGCCCTGCATTAGGTTTGCAGTTTGGGTTAATGCTTAATGTAGGGTATATTATTCACACATGATGATCTTGCGTTAAATTCCACATCAGCAAGAGCGAGTTTTCGTCATTTTAGGTGCTGGACAATATGTCCTTAATACCCCAAAAATATCCAGTTAAACCTAGTCACTATAATGAAGGTGGTTAAAGTGCCCATGTatgttttacacaaacacatgcagagGTACATCCCTGAACATTGTCGTCTCCAGTGCTGATTATCTGCTCCCACACTGAATCCCgaatatttacaaatacattaaacattGCATCATTCCTCTTTCAGTTTGCATATCAGCAGTAGTTCATTCAACCCAAAGACATCGCGTTGCCAGTAAAGTCAAGAGGTGCAAAGGGGTTAAAGTGATAAGGATCTAAATTTCAACGTTGattaaagcaattttttaatggtcacatttaatttagcaataagtaaatcaaaataaattgcatttgtgACCACACTTGTCACGATGATCTtcaatatagaaatataaaaaaatctactttaaaatattgtatactGTGGTCACTGCTGTAATGTTATATCTTCATTTTACACCACGTCTTaccattaatgttttttttttatccagacTCAGTCGATCTTTTGACTGACATTAGTGTCAAAGACATAACATCAAACAGCAAAAGTAACGATTCGTGATCAGATATTCCCCTTAAGACGACTCAAAACATCTTCCTCTTATgcgttttagacattttaaaacttgaaaGACAACAATTGCGGAGtccattttttacattatgacACAGAAGGAATTAACATCCTAAATCAATAGACATTTAATTCGCATAGTAGTCTTCACCGCTCTAAAATCATTCAGGTCTTTAAAGGTCCATATTAAGAAaaaaaaaaaaaaatcaacttgtAAAAAGTGCTTTGTGTTTGCTATACTATATATAGAACATACCTATGaattcaaatgttaaattattttatttgagtaaaatgtctatatttttcatatataactttaataaaagtttgACGATACGATTTAGAAACGTTTCAGGCatttccttaattttttttctttctctattcAAAATGTtgcaaacaaaaagttttgttttccaATCATCTAACAAATGCTAGTTTCTTTCATATTATAATGAAGTGCCTTTTTAACAAGATTAACATATTTCTTAAAGTCCTCATTGATCTTCCTTAAATTATAAATTCGAAAGGTACTACATATCAGGAATGACcctgcataaaaataaataaaatttatgtaATCAAGAAAGAGTGATATCACATCCGGCCTCATAGTTTTGGCCAGAATTAATATAATGCTACATGCTGTTTGGACTATTAATGGTGTGTTCCAATAGAGGGCACTAGTGAAACCACACACAGTTACTTGCCTTTCAGAAGGTAACTATAACCCATACACTGTGGATTCTTGCTGCAGCATCGCAGTCTCTGTTATGAAATGATAACCGCCATACGTTTATAATTGCAGTTATTTCTGTGGTGCTGGGGGGGAATAAATGCTCCTAAGCCTTTTTCCATGTTTGGTCCGGGACAGCAGAGTTCGACTGCAAGTCATAATACGGTTCAGCGCTGTCAGAATTTGCCGCAGTTGCTTTTTTCCTCTCCTTCTCTGCATTCTCTCCCTCCTCCACAGCAACGGGAAGAGGGGATTT

Function

GO:

id name namespace
GO:0022803 passive transmembrane transporter activity molecular_function
GO:0015267 channel activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005261 cation channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198250 lncRNA downstream 3740 17589996 ~ 17594324 (-) True G134245
TU197866 lncRNA downstream 252848 17325331 ~ 17345216 (-) True G133970
TU197844 lncRNA downstream 308684 17287667 ~ 17289380 (-) True G133951
TU197789 lncRNA downstream 330016 17265664 ~ 17268048 (-) True G133917
TU197792 lncRNA downstream 336565 17260710 ~ 17261499 (-) True G133920
TU198296 lncRNA upstream 118333 17789027 ~ 17789326 (-) True G134272
TU198298 lncRNA upstream 118857 17789551 ~ 17798825 (-) False G134273
TU198299 lncRNA upstream 126371 17797065 ~ 17798825 (-) True G134273
TU198352 lncRNA upstream 181478 17852172 ~ 17857186 (-) True G134299
TU198337 lncRNA upstream 198437 17869131 ~ 17871519 (-) False G134298
XM_043218490.1 mRNA downstream 20075 17554552 ~ 17577989 (-) False fam131ba
XM_043218489.1 mRNA downstream 20076 17554552 ~ 17577988 (-) True fam131ba
XM_043217216.1 mRNA downstream 63956 17526412 ~ 17534108 (-) False styk1a
XM_043217215.1 mRNA downstream 64532 17526413 ~ 17533532 (-) True styk1a
XM_043217217.1 mRNA downstream 65359 17526412 ~ 17532705 (-) False styk1a
XM_043218144.1 mRNA upstream 17971 17688665 ~ 17694766 (-) True ndufv1
XM_043217214.1 mRNA upstream 25276 17695970 ~ 17706893 (-) True hcn3
XM_043218187.1 mRNA upstream 37320 17708014 ~ 17710108 (-) True si:ch211-81a5.8
XM_043217506.1 mRNA upstream 40656 17711350 ~ 17720489 (-) False clk2a
XM_043217505.1 mRNA upstream 40656 17711350 ~ 17720489 (-) False clk2a
TU197840 other downstream 263830 17330697 ~ 17334234 (-) True G133948
TU197841 other downstream 313320 17283332 ~ 17284744 (-) True G133949
TU197783 other downstream 379315 17217788 ~ 17218749 (-) False LOC122323474
unassigned_transcript_2205 other downstream 697288 16900705 ~ 16900776 (-) True trnap-ugg_15
unassigned_transcript_2203 other downstream 699463 16897995 ~ 16898601 (-) True LOC122324115
TU198368 other upstream 258995 17929689 ~ 17935436 (-) True s100a10a
TU198369 other upstream 258995 17929689 ~ 17931750 (-) False s100a10a
TU198381 other upstream 340188 18010882 ~ 18011399 (-) True G134318
XR_006247044.1 other upstream 513447 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other upstream 513447 18184141 ~ 18188020 (-) False si:dkey-266f7.5

Expression Profile