RNA id: TU198267


Basic Information

Item Value
RNA id TU198267
length 876
lncRNA type inter_gene
GC content 0.37
exon number 5
gene id G134252
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17620174 ~ 17645633 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTCTCGGTGCCTGGTCAACATCCGCTCTCCTTTGCACTTCActtacatagtttttttttttttttttttttctcttttgcgtTGAATCATTTTCCAGCTCTATCCCACAGATTTTTGCATTCATAATGTGAAAGCATTTCAGAGTGCTGAATGAACAGTAGGAAATGGGATGGGTAGGAGGAAAAACGTGGTTTGGGAGGAAACGCTGAGAGGAGAGAAGTGACTGGGATAGCGGAGAGGAGGAAGGACCTGGAGCAACGAGAGAAAGAGCCAAATGTGGGATCAACGAAACCGCGGGAAAAGAAGGAGGAACGGCCAAAATGatcACAGTTCTTATTCAGCTGGAAGAAATGGCAGTTACATAAAGAATGCTGTGGAACCGTCTTGGAATCATCCACGATATTCCTTCCCCGAGACTGGAATGATGGAAAGAATTTCAGCATGTCGCAACTTCAGGAGACTTAAAGACGTCACGCAATTCGGAGAAGAAATCGTCATTGCGAGAGTGatgcatttactttttcttttgacGAATCTAACAAAGCTTTGGGTTGGtaagatgttttaatatttttgaagcaCGTTCTCAAAGTGCtcaaaaaggctgcatttatttgatcgaaaatacaattacaaatgcattatcTTATTGCTGctgttattattcatttattattattatttaaagaaatattttttattatcaaggCTGAAAACTGCTTTTTCACCcttcatttcattcactttttctATAGCATAAGATATGGTgaattatctgtttttttattacataaaaataataaaaatctgtcataaATCTGTGGCCTTAATCATTTCTGTAATCATGTCTCTGCAATAAAAAATCTCTGTCAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198250 lncRNA downstream 25850 17589996 ~ 17594324 (-) True G134245
TU197866 lncRNA downstream 274958 17325331 ~ 17345216 (-) True G133970
TU197844 lncRNA downstream 330794 17287667 ~ 17289380 (-) True G133951
TU197789 lncRNA downstream 352126 17265664 ~ 17268048 (-) True G133917
TU197792 lncRNA downstream 358675 17260710 ~ 17261499 (-) True G133920
TU198296 lncRNA upstream 143394 17789027 ~ 17789326 (-) True G134272
TU198298 lncRNA upstream 143918 17789551 ~ 17798825 (-) False G134273
TU198299 lncRNA upstream 151432 17797065 ~ 17798825 (-) True G134273
TU198352 lncRNA upstream 206539 17852172 ~ 17857186 (-) True G134299
TU198337 lncRNA upstream 223498 17869131 ~ 17871519 (-) False G134298
XM_043218404.1 mRNA downstream 3897 17613446 ~ 17616277 (-) True LOC122324164
XM_043218092.1 mRNA downstream 7907 17607953 ~ 17612267 (-) True si:ch211-288g17.3
XM_043218093.1 mRNA downstream 7916 17607953 ~ 17612258 (-) False si:ch211-288g17.3
XM_043218094.1 mRNA downstream 8150 17607953 ~ 17612024 (-) False si:ch211-288g17.3
XM_043218490.1 mRNA downstream 42185 17554552 ~ 17577989 (-) False fam131ba
XM_043218172.1 mRNA upstream 4249 17649882 ~ 17656526 (-) False si:ch211-288g17.4
XM_043218171.1 mRNA upstream 4249 17649882 ~ 17656525 (-) True si:ch211-288g17.4
XM_043218170.1 mRNA upstream 12426 17658059 ~ 17662089 (-) True si:rp71-15k1.1
XM_043218169.1 mRNA upstream 12426 17658059 ~ 17661980 (-) False si:rp71-15k1.1
XM_043217408.1 mRNA upstream 17357 17662990 ~ 17685921 (-) False kmt2ba
TU198224 other downstream 3936 17613480 ~ 17616238 (-) False LOC122324164
TU197840 other downstream 285940 17330697 ~ 17334234 (-) True G133948
TU197841 other downstream 335430 17283332 ~ 17284744 (-) True G133949
TU197783 other downstream 401425 17217788 ~ 17218749 (-) False LOC122323474
unassigned_transcript_2205 other downstream 719398 16900705 ~ 16900776 (-) True trnap-ugg_15
TU198368 other upstream 284056 17929689 ~ 17935436 (-) True s100a10a
TU198369 other upstream 284056 17929689 ~ 17931750 (-) False s100a10a
TU198381 other upstream 365249 18010882 ~ 18011399 (-) True G134318
XR_006247044.1 other upstream 538508 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other upstream 538508 18184141 ~ 18188020 (-) False si:dkey-266f7.5

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU527430 True 4666 lncRNA 0.39 2 CI01000321 4270828 ~ 4275784 (-)