RNA id: TU198291


Basic Information

Item Value
RNA id TU198291
length 1811
lncRNA type sense_over
GC content 0.38
exon number 6
gene id si:dkey-266f7.5
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18169523 ~ 18188029 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttcagagtgaatagAAATAGCAAATAAGTACTGTTGTACTGAATTAAGTGATTTGCCGTGTTCATGTTGAGTAAATGGAGCCACAGTGTCTTCTGATTTGTATCaggtatatatatgtacaaatgtACAGAATGTACGAATTGAGAAGCGCTGCTGTAACCCCTCCCCCCATACGGTTGATGAAAGATTGTCAACAGCATTCACACGTGTGAGAGTGTGGAAGCATGTGATTTCAGTGCACAACTCAGCATGTATGCGGTTGTTACTCTGCTGGACTCAGATGAGGTGATGGTGGTACCATCAAACTGGCTGAGCATAGACAAGAAACAATGTCACTGGCCTCCATTCAAAACATCAAGAAGTGCACAGAAGCTGTTCAGAACAGAATTAAACCTGAAAGAGGAGGGAAATCGTGggagaaattaaatattaactttcaCAGAGCATATGTCACTTTTGAGAAGGCAAAAGAGGGGCAAAAAGAATTTACAAAATGGTAAGTAAcagataattatttaaataaatttacctAAAAAGATCAGAAATTATTTGTGCcgttttgcattgtttatttgcatataaaggGCATTTTTACTAGCTTCTGGATTCCCTGGATTGCTAAAAAGATCAAGACTCGAAAGCGATCAAGAAATGTTAAAACAGCAACATACGCCTGCGTCGACATCCAGAGCGTCTACTGATAACCAGAGTGAGCTCCTTCAAATGATGAGAGGCATCAGGACCACAGTTCTGGAAAACTCAGCTATGTTAAAGAAGCTACTCAAAGAAAATACAACCCCCGAGTCCCCAGCAGTACCAGCATTCCTTCTAAAAGCTATGAAACAAACCTAAATCTGCCTCTTAGAACGCTTGAAGATGCTTGAAGGACTGAAAGAGAGCTCAGCGATTCAACAACACGTGAAAAATACgTAAATTATCTGTCAAGGATTAGAGGTTTTGGGCAAAAGGATGTGGTCAAGAATATTATGCAGGAAGTCCTGTCAAACGAACTGGCTGTGCAGTTTAACTGGCATGAAAGAGGAGATAAAAAGCCCTTCGCTAAGCTTATTTTAACAGATGTGATCAGAGATGCTGCATCAAAACAAAGCATAATGAGGGAAGAGTGCGacattgaaatgaaatattatttgtggACCATAACGGATCTAATCGGTTGAAGGATTATGGAGGAGAGTGacaaatatacttaatattttcTAACTTTCTATAGGCTGATCTTGCCCATGATTTTGGATTCTTCCATGTTAAGAAACCTACACCCATTTGTATAATAATCTTTATATTCTCCTTCCTGCTTCAGGTTTGACTTTTCCCACAATGCTGGACAGTGACACTGATGATGAATGAGTTCTGGAACATTTATGCATAGAAAACCTGCTTACACATTAGAcatgaattttttaaaacaatgtgtaaCAGTTTAGCGTTCCACTGCTTCATACATTGGCTTTTGAGATAAAATGCATATAGCGGTGTTCATTTGAGGTGTATATTTATAGTTAAGCTAGTTaagctaggctaggttaggctatgTTGTGGTAATATAAGATCCATCACCCTTCAGCTGTAAATACTGTGGTATCGCTGCATTCATGAACAGGTTTTCATTATTATAGTATCATAGAGGCTTTATTTTCCTGTCCAATAAGGGTCCTcctaaatatgaaatattcaatTAGTTATGGTGTTGAGTCTGCAGACTGTTTGTTCCTTTTCAGTGTTAAAGTTGTAATGATTTTGTTCCAAATAAATGATAGTCGGACAacatttttcttgcttttgtctttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198382 lncRNA downstream 165856 18017969 ~ 18018262 (-) True G134319
TU198380 lncRNA downstream 217579 17965575 ~ 17966539 (-) True G134317
TU198370 lncRNA downstream 236284 17938947 ~ 17947834 (-) True G134309
TU198341 lncRNA downstream 312162 17869131 ~ 17871956 (-) True G134298
TU198337 lncRNA downstream 312599 17869131 ~ 17871519 (-) False G134298
TU198394 lncRNA upstream 38483 18225609 ~ 18227143 (-) False cks1b
TU198393 lncRNA upstream 38682 18225808 ~ 18227143 (-) False cks1b
TU198421 lncRNA upstream 81179 18268305 ~ 18269060 (-) True G134334
TU198417 lncRNA upstream 81282 18268408 ~ 18268986 (-) False G134334
TU198419 lncRNA upstream 81282 18268408 ~ 18268891 (-) False G134334
XM_043217703.1 mRNA downstream 886 18176698 ~ 18183232 (-) False si:dkey-266f7.5
XM_043217702.1 mRNA downstream 926 18176698 ~ 18183192 (-) False si:dkey-266f7.5
XM_043217706.1 mRNA downstream 1045 18171647 ~ 18183073 (-) False si:dkey-266f7.5
XM_043217704.1 mRNA downstream 1045 18176698 ~ 18183073 (-) False si:dkey-266f7.5
XM_043217701.1 mRNA downstream 1047 18176698 ~ 18183071 (-) True si:dkey-266f7.5
XM_043217070.1 mRNA upstream 3867 18190993 ~ 18220415 (-) True LOC122323324
XM_043217204.1 mRNA upstream 22599 18209725 ~ 18216545 (-) True LOC122323394
XM_043217540.1 mRNA upstream 38667 18225793 ~ 18240853 (-) False cks1b
XM_043217538.1 mRNA upstream 38667 18225793 ~ 18240853 (-) True cks1b
XM_043217541.1 mRNA upstream 38667 18225793 ~ 18231229 (-) False cks1b
TU198381 other downstream 172719 18010882 ~ 18011399 (-) True G134318
TU198368 other downstream 248682 17929689 ~ 17935436 (-) True s100a10a
TU198369 other downstream 252368 17929689 ~ 17931750 (-) False s100a10a
TU198224 other downstream 567880 17613480 ~ 17616238 (-) False LOC122324164
TU197840 other downstream 849884 17330697 ~ 17334234 (-) True G133948
TU198770 other upstream 689488 18876614 ~ 18933139 (-) False smim13
TU198769 other upstream 740395 18927521 ~ 18933139 (-) False smim13
XR_006246998.1 other upstream 1355656 19542782 ~ 19652807 (-) False khdrbs3
XR_006246997.1 other upstream 1355656 19542782 ~ 19652806 (-) False khdrbs3
XR_006247087.1 other upstream 1483661 19670787 ~ 19688386 (-) False LOC122324012

Expression Profile