RNA id: XM_043217700.1


Basic Information

Item Value
RNA id XM_043217700.1
length 1508
RNA type mRNA
GC content 0.39
exon number 9
gene id si:dkey-266f7.5
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18169523 ~ 18188029 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACTGTTGTACTGAATTAAGTGATTTGCCGTGTTCATGTTGAGTAAATGGAGCCACAGTGTCTTCTGATTTGTATCaggtatatatatgtacaaatgtACAGAATGTACGAATTGAGAAGCGCTGCTGTAACCCCTCCCCCCATACGGTTGATGAAAGATTGTCAACAGCATTCACACGTGTGAGAGTGTGGAAGCATGTGATTTCAGTGCACAACTCAGCATGTATGCGGTTGTTACTCTGCTGGACTCAGATGAGGTGATGGTGGTACCATCAAACTGGCTGAACATAGACAAGAAACAATGTCCCTGGCCTCCATTCAAATCAACAGAGAAGTTCACGGAAGCTGTTCAGAACAGAATTAAACCTGAAACGGGAGGGAAGCCGTGggagaaattaaatattaactttcaCAGAGAATTTGTCACTTTTGATAAGGCAAAAGAGGAGCAAAAAAATACTGAAGAGCAGAAAGAACGgcGATATCTATTAGCCACTTGGTTCTCTCCATTACTAAAAAGACAAAGACTCGAAAGCACTCAAGCAATGTCAAAACACCAACTTACTCCTGCATCACCTGCATCTACATCCAGAATGTCACCTGATgACAAGGATGAGCTCCTTCAAATGCTGAGAGACATCAAGAGCACGGTTCGGGAAAACTCCTCTATGTTAATGAAGATACTCAGAGACAATACAGCTCCTGAGGTCCCCAGCAGTACCTCCGTTGCAACTAAGGACTTTAAAACAAGTCTAAATCTGCCTCTTAAAACCTTCGATGATATGGAAAGAAGTGAAAGGGACCTTAACACTGCAACAATGCGCAAAAAATATGTAAAATATTTGTCAGGAATTAGAGGTTTTGGAAACAGGGATGTGATAAAGAACATTATGCAACATGTCATAACAGACGATCTGGCTAAGGAATTCAACTGGCAGGGAAGAGGCGAAAAGAAACCCTTCTCTCAGCTGATTTTAGCAGACGTGATCAGAGAGGCTGCgttcagaaaaaatataatcagGGCCGACTGTGAAgcggaaataaaaaaatatctgagTTACACAGCTGACAGACTCAGTCGGAAGAGACTAAGAGAACAACAAGGTCCTGGGCATGATATCCCAAATGTGACTTCCATACTATTGGACGAAGATGCAGAGTTGTCTTGGGATTTTTTTGATGACTGAGTATTCAATCATGCAGACACAATTACACAATAACCATATTTTATGAAGTACgttatgctattttaaattatacagtttttttaattatttcaaattgtgTTAATATCTTTTTCTTGAATCTTCAtctaaatgtacaaataataacatattgaaAAATCTGCTTCTCTGTGACATTACTGCATTCCATGATTTTCAGGTTTGTGACAGTAGAcaatatcaaaacaaacaacatcgGTGTACAGCATTTTGTGAATATATCTGTTGTTTCCAGAGATTCTTTAAATTACAATtccattcaaaataaatcagaattaCAGATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198382 lncRNA downstream 151261 18017969 ~ 18018262 (-) True G134319
TU198380 lncRNA downstream 202984 17965575 ~ 17966539 (-) True G134317
TU198370 lncRNA downstream 221689 17938947 ~ 17947834 (-) True G134309
TU198341 lncRNA downstream 297567 17869131 ~ 17871956 (-) True G134298
TU198337 lncRNA downstream 298004 17869131 ~ 17871519 (-) False G134298
TU198394 lncRNA upstream 38511 18225609 ~ 18227143 (-) False cks1b
TU198393 lncRNA upstream 38710 18225808 ~ 18227143 (-) False cks1b
TU198421 lncRNA upstream 81207 18268305 ~ 18269060 (-) True G134334
TU198417 lncRNA upstream 81310 18268408 ~ 18268986 (-) False G134334
TU198419 lncRNA upstream 81310 18268408 ~ 18268891 (-) False G134334
XM_043217222.1 mRNA downstream 67932 18031309 ~ 18101591 (-) True efna3a
XM_043217531.1 mRNA downstream 187068 17969484 ~ 17982455 (-) True efna1a
XM_043218271.1 mRNA downstream 234622 17930790 ~ 17934901 (-) False s100a10a
XM_043218270.1 mRNA downstream 237948 17930790 ~ 17931575 (-) False s100a10a
XM_043217635.1 mRNA downstream 240327 17916500 ~ 17929196 (-) True snx27a
XM_043217070.1 mRNA upstream 3895 18190993 ~ 18220415 (-) True LOC122323324
XM_043217204.1 mRNA upstream 22627 18209725 ~ 18216545 (-) True LOC122323394
XM_043217540.1 mRNA upstream 38695 18225793 ~ 18240853 (-) False cks1b
XM_043217538.1 mRNA upstream 38695 18225793 ~ 18240853 (-) True cks1b
XM_043217541.1 mRNA upstream 38695 18225793 ~ 18231229 (-) False cks1b
TU198381 other downstream 158124 18010882 ~ 18011399 (-) True G134318
TU198368 other downstream 234087 17929689 ~ 17935436 (-) True s100a10a
TU198369 other downstream 237773 17929689 ~ 17931750 (-) False s100a10a
TU198224 other downstream 553285 17613480 ~ 17616238 (-) False LOC122324164
TU197840 other downstream 835289 17330697 ~ 17334234 (-) True G133948
TU198770 other upstream 689516 18876614 ~ 18933139 (-) False smim13
TU198769 other upstream 740423 18927521 ~ 18933139 (-) False smim13
XR_006246998.1 other upstream 1355684 19542782 ~ 19652807 (-) False khdrbs3
XR_006246997.1 other upstream 1355684 19542782 ~ 19652806 (-) False khdrbs3
XR_006247087.1 other upstream 1483689 19670787 ~ 19688386 (-) False LOC122324012

Expression Profile