RNA id: TU198337


Basic Information

Item Value
RNA id TU198337
length 2307
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G134298
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17869131 ~ 17871956 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cagacaAAGAACTCAGTCGTCCGCAAGAATCTTTATCTTTCATCATTGATTAATGATGAtacaaaatacaacataaaacacTGGCAGCTGGGACGCTGATCAAATCTTTAATGTTTGTGCGGTGGACCTGCAGTCGACAGGACGAGGTGAAGGGGGAGGATTGGTCCTGGCACTGGGCCGCGAGGAGAGATGAAGTTGAAGGGATGTAAACAGAGAAGGAGTGACAGAGGATGATGGTTCAGCTTAAAATCTAAAGGCGATGAGGTCAGGAACACGAGGACAACAAGCACACATGGAAATGACACAGATATACGATCACAAATAAGGCACTTGTGACAACATTTGgaaacttaaaataactttgtaaaGCCAATCTAGATGTCCTGTTCCacttgtaaaaatgcattacacgCTGAGCACCTGTACTGACGTCGACGTTCATGTATTAACAAAAGAAATACTGGACCACGATCTGTAAACCTGTTGCTTAAATTATAACAAGAGATCACGCGGAACTGAATATGACACTTAAaaggttcacccaaaaaaaaaaaaaaaaaaaatcatcatttattcatcctcatGATTCTGCGAACATAAAAGATTTCAACTATTTTGAAGTGAAGCCAATGGCGTCCGGTGTCGTTTAATTACttttgtcaaaaaaagaaaagaaaaaaaaaagacagtgtttattttagggtgaactgCGCCTTTAAGGTTTAACGTGATCTCTTGTAAAGCAGCAGACACTGGGCAAACATTACATACTGGAGGATATATTGgaacataacttttttttttgaaaactatgGAATCCATTTCCCATAAATACCACCAATGCAAGCCAGAGTCTCAATTATGTCAAACAGTTCGCTAACAAGACaatcattataatgcattttacattagaCGGAGAGTTACAAAGTGCATCCAGCACTCAATACTGACTgttattgtaattattcatCGTGTAAATGGTAGGGAAAAACACTAACTACAGGTTCTCCTGCCAAgtactttgtttttgctttttacaaaGTCGTTTTCCACATACTGCATAAATTATCAGCTTATCGggtttgctgaaaaaaaaaaaaaaaaaaaaaaaaaaaaatggaccttaaataaaaataatgttaaatgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagcattttaaaataaccgtaactaatatatttaagaatgcatttttaacagaaatgtGTTACAGGTCACACTCCGACCAACACGAATATTAGATATGAGATTCttacacgcacacgcacacacacacacacacacacacgcacacacacgcacacacacgcacacacacacacgttgctTCGGTACAAACTCAACAGACGAATCTTAAATGCAAAAAGCCACACATTCATTCAGCGCCTTTGGGACGGGATATCATGGCAATACAAATCTTTAAGAGTCTTTGCGTCTCTGTAAAGTGGTAGTGTTGCAAGACTGGGTCAGTAACGTTTACTAGTGCAACTGGATTGGGGAAAGATCAAGTTTTTCTAAGCAAAACAGGTGTGTGAAGGTCACTTGGTGAGACTGTTATTATACAGTGAGGAAACGGgtgacaaaatgaaaaattccaGTCGGTTTCTAGCAACGTCAGAACTCAAATACTGAGCGATTCTCGGAAATCTGACGGCTGACCAGACAAAACATGCCGAAACGTTTCGCTGACAAGTAAAGGGGGGgatgacagtgtgtgtgtgtgtgtgtgtgtgtgtgatgcccaaaagacaaaaaggaaatgaaatgtATGAATGGCAGTACAACTTTGTACTAATAAAGGCACTGATCGTGTAATAAACTGGAGGAAACAtttccagtaaaaaaataatggatTCACTAACATTGGGCCCCGAACAAAACAAAAGGGTTATTTAAAGATACGGTGACTATTAATAGTGTTTTAAACAGGGGAAATCGTTATATCGTTTCTCCTTTTCAAAGTATGTCCGTTTCCAAAAAATTAGTATCATATATATCTACATgtattgtgagtgtgtgtttgctccGGGCCTTTTCAATCCATCAAGCAGCCCTGGCATTAGTTTGTTGGTCTGGTCCGTGTGCACAGGAAGGGCAGTGTTGTACCTCCTCTCTGGGTTCTGCTGGTATCACTCAGTCTTGCGGTGATGGTTGTTGTTTAGAGGAGAGTGGCCGTTCTGCACCGGCCCATTTTTCATCGGCGCTTTCCTGCCTTCCTGTTCTTCCTCATCGTCCTCGGAGTCTGTTTCTTCTCGGTCACTCCTCTCGTCCTCCACAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198352 lncRNA downstream 11945 17852172 ~ 17857186 (-) True G134299
TU198298 lncRNA downstream 70306 17789551 ~ 17798825 (-) False G134273
TU198299 lncRNA downstream 70306 17797065 ~ 17798825 (-) True G134273
TU198296 lncRNA downstream 79805 17789027 ~ 17789326 (-) True G134272
TU198258 lncRNA downstream 198437 17598064 ~ 17670694 (-) True G134247
TU198370 lncRNA upstream 67428 17938947 ~ 17947834 (-) True G134309
TU198380 lncRNA upstream 94056 17965575 ~ 17966539 (-) True G134317
TU198382 lncRNA upstream 146450 18017969 ~ 18018262 (-) True G134319
TU198291 lncRNA upstream 312599 18184118 ~ 18187126 (-) False si:dkey-266f7.5
TU198394 lncRNA upstream 354090 18225609 ~ 18227143 (-) False cks1b
XM_043217265.1 mRNA downstream 74171 17792359 ~ 17794960 (-) True crabp2b
XM_043218148.1 mRNA downstream 81032 17780819 ~ 17788099 (-) True scamp3
XM_043217247.1 mRNA downstream 89975 17772595 ~ 17779156 (-) True rnf115b
XM_043217517.1 mRNA downstream 99357 17741746 ~ 17769774 (-) False ash1l
XM_043217635.1 mRNA upstream 44981 17916500 ~ 17929196 (-) True snx27a
XM_043218271.1 mRNA upstream 59271 17930790 ~ 17934901 (-) False s100a10a
XM_043218270.1 mRNA upstream 59271 17930790 ~ 17931575 (-) False s100a10a
XM_043217531.1 mRNA upstream 97965 17969484 ~ 17982455 (-) True efna1a
XM_043217222.1 mRNA upstream 159790 18031309 ~ 18101591 (-) True efna3a
TU198224 other downstream 252893 17613480 ~ 17616238 (-) False LOC122324164
TU197840 other downstream 534897 17330697 ~ 17334234 (-) True G133948
TU197841 other downstream 584387 17283332 ~ 17284744 (-) True G133949
TU197783 other downstream 650382 17217788 ~ 17218749 (-) False LOC122323474
unassigned_transcript_2205 other downstream 968355 16900705 ~ 16900776 (-) True trnap-ugg_15
TU198368 other upstream 58170 17929689 ~ 17935436 (-) True s100a10a
TU198369 other upstream 58170 17929689 ~ 17931750 (-) False s100a10a
TU198381 other upstream 139363 18010882 ~ 18011399 (-) True G134318
XR_006247044.1 other upstream 312622 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other upstream 312622 18184141 ~ 18188020 (-) False si:dkey-266f7.5

Expression Profile