RNA id: TU198352


Basic Information

Item Value
RNA id TU198352
length 4007
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G134299
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17852172 ~ 17857186 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aaattttattcaaatttttttttgtaattgacaGGTTGTGAAACAACagttgaagaaaataaatagaataataataatgattgttCATTAATGgtaaatctgtaaataaaatgtctaaaaatacatGGATTCATTGGAACGTGCCAATGATCCTCTAtcttcataaataatttaaaaaatgccctCCATCAAGAAATTgataaattaattgcaaaaaaaaaaaagatagaaatcACTTttcctaaataataataataataataataataaataataatatcccaaatgtttaaatcttgaccttcattttaaaagcatgatatatatacaatgaaatacatttttaaatgtttgtaactTTCATGAATCTTCTCGAATCATccacaattttaaaaaagaaagaaagaaaaactaacaaacctaaaaataaaaaaactctaaCTACAGCCTCTCTGTGATAAACTATATTCAGTCATTTTAGGGAGGTTCGCAATATAGGACCAGCATCCTATACCTCAGGTCATGTGTTTCCTTAAGTATTAAAGATGAAGAACTATGAATAACTGGACTCCGATTAGAGACCAAGAGCAAATCCTTCAAAACTCCCGAAAAGGACATTCTTTCTCTATCTACCGTGAACCTCCCATGATTCTTTGCTCTGATCACATTGACCCAGTCCCACCCTCCCAACCGTTTCGATATGTCTACACATGGTCCCCTCAAatttctatatacatattttagatTGCTGCAGAAAGACTTTAATAGTTCATAGTTCCTTTGAACCCAGAAGCGAAACTAGTGTACTGACATATTTGCATTGGtcccatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagggcgTAAATGTCTGGGCAGAGGGCAGAAAGGTCACGACCCACAAGCACACGGCACAACAGCGTGTGAAGCAGAAGAGCGAGTGGCGTTGCGTTGCTGATTGGTCCTATATCGTATACTGTTAAGGTAGCAAATCTGCAAATCTATTTAATCTGCACTTTGTGCAATAAGTCTgtctttgttattaaatgtatatttttgtttaaataatcttGGTAGGTTTTTTATACTGTAGTTTTGTGAAAGTTGTTGGTCCCGTAATTTGCAGTGGAGGAAAAGTGACTTGTAATCGACTCCGATAGTCCTCTCCTTTCTTCCCTGTGAGAGGAAAGAAAACGAAAACAGCTGTTAAAAGCAGgtcacataaacacaaaaaaacactcctACTTATTTCACAGTTGTTAACACTATTGTGCATTTGGGAAGGTTATCTGAGGCTACGTCCACATTGATCTggataaatgtgattttttttggtttttgtccACACCGAGCAtctcaaaatatcacaaataccCATTTTGGTCCAGCAAAAACAGCAGCTTGAAGATGTTCTCCTGAGTATATGAATTTGAAAACGTTATAGTGTGGACTGCGATAAAGGAGGTATGTTTAAATGATGAGAGACGTATTGTACTTGTATTGTATGCATCTGTGGTTCTACCAGCACTCTTGTGCTTTCTATACTTTTAAAGATAAATGTCTGCAAATATGACTTTATTTACTCGCAGTTGCTGGAGGATGACAGTTTTTCACTCGTATGTTAAAGGACGATTTTGAATGTGCCCGTGGATGCAACAAACAGTGGTTGGATATTAGGGGCTTTCGCACCACATAGTGTTAGGGACTCAGTTACTAGCTAGCGAATGGTTTCTAAAGAACCAATTTCTCCCTTCGGCTAATTTCCTGATCGAGCACGAACTCTGAAGCGGCCGACAGCGACaatgttttgcatttacaaaCCTCGAAAGCCAGAGAATGGAGGATGCAGCGATTGCGATTGTTGCGTTTTGTGGGTTTTACGGTAACAGAGATTGGATTGTATATGGAAAATTTACGTGACTGAAAGAGCTAAATCTCCTACGACGACTCGCGGTGTTACACATCATGTAGGCTGAGAAAAGAACGCAACGCTGGAGAAAATAGGTTAACATCATTACAGCTGTTTTACTTGTTTGTGGAGTAAATAAATTTGCgcggctttttaaaaatgccagaTAGACCGTGTTTCGTATGCTTTTGGCCAATCAGTGCAGTTTAGTTTTGAACTTTGAAAAAGTACCACTGGTGCAAAAGCCCCCatttattactaaaatgatCACAGCGATGGAACTGAATCTTTtagaaaacacttaaaaacgCTAGTGTGTACAGAGCGTGTCTGAAACGTATTAAATCCGTATTAATGTGGACGTAGCCTAACGCTTACCATTCTATACTTCCATGCAACCTACGTTGTGAATCAGTGAATGGGGTTTTTATgcaagtgtgtgtttctgtgttagTGATCGTTTAGAGTAGGGAAACATTTCTGGCAGGCAAACAAATTTCCAACATGCACCATAGGAATTCTGGGCCGTACTGCGTTCAGCTGGAGACTTAACtgcgtctttttttttcctttttttttttttgaatgctcaGACGAATGACTGAATATAAATGAGCAAGTTTTCTGTCATAACCCAGAATTCCTACAGAGGAATGCTGTTCTTTGGTCGGCACAATGCGTCACTCGTTTCACCATAACAACCACAGAGTGTCACCTCAAACCTCATCGTGAGAGGTTTGAGAGATATAATGAATGAAGTTCCCTACCTCTCGTTCGCTCTCACGCTCAAACGCACGGATCGTTCGCATCATTCACGCAAGCACGTACACAAGCTCACTCGTTGGCACGAAACAGCATATCCACTAGCACAAACGCTCTCGGAATCAAATACAACCACACTGAGACCCCCCCCACCCCACATTCACAGTAACTATAACACCACCAGACTACATATGGGAGTATTTTGTATAAGAAATAGAGTCATgaccaaacaaaacacagaggagactgatcaaaaacaaaatccacCCAAAAGCAGCACATTGAGCTGGTTGATTAGAGTTCAATAGGATCAATTGAGTTTGCGTAGCTCCGTTAACTACCGGAGTTACGTTAGGAGCAAATCACAGATTAGTGTCAGTTATTGAtcagtatttataaaacaaaaagagagagtcACAACGCACCAAACACAGTCCATAGTCACCACGTTAACCCGCCATGCACTCTCAGCATGGAGGATACATGACAAAgggccaaaaaacaaaactgctaaTGGCAACCATCACAGGCAGGAATATCTCCACAGCAACCAACACAGGCCAATCAACTTACAAACCAACGCTGTGGGAGGAAGGGGGAGCTTTATTGGATGCTAGGCCACCATAGCCATAGCGACGTGGTCTCCGCACGAGTTATGATTGGACGGGGCAGCCTTGGTGTGGAtgaggttgtgtttgtttgttttattgtttttttttttttttttttggtgaacaatgacacagcacaaaaacaataaatgaaagtaaaaattaatgagtgtttttttttcttcgtcttTTTCGGCTACGTTTTTTTAAGAGCTAATGCTGATGAGTTACACTTTaggttacagtatttatttatacatcattaGGTCTGTGGTAACAATTTTATTCAGTCAAAACAGGCTAGACTGGTTAGCTTAGAACTGCTCACAAAGGATAATACTGAGAGTTTTTACGAAGAGGCACACGCTTTCCTCACCTGTTCAGCTCAGTATGGGCGGTTAGCGTCTTTAGGCCTCTTCAGCTGAACTTTAAGCCTCTTCATGCCGATCTGAAAGCCGTTCATGGCCTGGATGGCAGCCTGAGCACTCGCTGGGTTGTCGAAGCTTACGAAACCTGCAAAGCATTTGCTCTGGTTGGTGGCACGGTCAACGAACACCTTGGCTGAGATGACGTTACCGAAGGGCAGAAACATCTGCAGCATCTCAGAGTCAGTGAACTCCTGAGGCAGATGATAAATAAAGATATTGCAGCCTTCTGGGCCTGGAGAAAgtaaaagaagaaaagataTGAGACACTGGCAAGAGCAAAGGAGGAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198298 lncRNA downstream 53347 17789551 ~ 17798825 (-) False G134273
TU198299 lncRNA downstream 53347 17797065 ~ 17798825 (-) True G134273
TU198296 lncRNA downstream 62846 17789027 ~ 17789326 (-) True G134272
TU198258 lncRNA downstream 181478 17598064 ~ 17670694 (-) True G134247
TU198267 lncRNA downstream 206539 17620174 ~ 17645633 (-) True G134252
TU198337 lncRNA upstream 11945 17869131 ~ 17871519 (-) False G134298
TU198341 lncRNA upstream 11945 17869131 ~ 17871956 (-) True G134298
TU198370 lncRNA upstream 81761 17938947 ~ 17947834 (-) True G134309
TU198380 lncRNA upstream 108389 17965575 ~ 17966539 (-) True G134317
TU198382 lncRNA upstream 160783 18017969 ~ 18018262 (-) True G134319
XM_043217265.1 mRNA downstream 57212 17792359 ~ 17794960 (-) True crabp2b
XM_043218148.1 mRNA downstream 64073 17780819 ~ 17788099 (-) True scamp3
XM_043217247.1 mRNA downstream 73016 17772595 ~ 17779156 (-) True rnf115b
XM_043217517.1 mRNA downstream 82398 17741746 ~ 17769774 (-) False ash1l
XM_043217635.1 mRNA upstream 59314 17916500 ~ 17929196 (-) True snx27a
XM_043218271.1 mRNA upstream 73604 17930790 ~ 17934901 (-) False s100a10a
XM_043218270.1 mRNA upstream 73604 17930790 ~ 17931575 (-) False s100a10a
XM_043217531.1 mRNA upstream 112298 17969484 ~ 17982455 (-) True efna1a
XM_043217222.1 mRNA upstream 174123 18031309 ~ 18101591 (-) True efna3a
TU198224 other downstream 235934 17613480 ~ 17616238 (-) False LOC122324164
TU197840 other downstream 517938 17330697 ~ 17334234 (-) True G133948
TU197841 other downstream 567428 17283332 ~ 17284744 (-) True G133949
TU197783 other downstream 633423 17217788 ~ 17218749 (-) False LOC122323474
unassigned_transcript_2205 other downstream 951396 16900705 ~ 16900776 (-) True trnap-ugg_15
TU198368 other upstream 72503 17929689 ~ 17935436 (-) True s100a10a
TU198369 other upstream 72503 17929689 ~ 17931750 (-) False s100a10a
TU198381 other upstream 153696 18010882 ~ 18011399 (-) True G134318
XR_006247044.1 other upstream 326955 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other upstream 326955 18184141 ~ 18188020 (-) False si:dkey-266f7.5

Expression Profile