RNA id: TCONS_00009879


Basic Information

Item Value
RNA id TCONS_00009879
length 3772
RNA type mRNA
GC content 0.42
exon number 10
gene id XLOC_005079
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3054442 ~ 3077395 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCAAAACGTGCGTCTTTGGCATCAACAGAAAGGACAATGTAGTTGTTGGATATATATTTGGCAACGCGCAGACGCAGAGGTCATTATAAACAACCCAAGACAGCAGAGATGATGCACAACTGAACAACAGAGAGTTTGAGCTGCTGAAACCAAAGATATGCGTGAAACTTTATAATAAACAGCGGAAACTGACTGAACATATGAGCTCCAGAAGCAGAAGAAGTCAAGCAGGAACAATAAGGCTTGTGTGATTCATGCTGATTTCTACTCGACGAAAAGCTGCTGAAATCACCGACCCAGCCTTCGCCTGCGGATTATTTCAGCCTAGCATGATCTATACTGATTTCTGTGGTTTCACCGGTTTAAAAGTCTGGAAAATGAGGAGTATATTGACCCGAAACCAGTCCGACCGCTCTCGAATGATGCACTGAAGATGGGCTCTGCAGCAGTGAGTCAGGCAGGCGCGGGCGGTTGAGCTGGCGTTCAGCATTGGAAGAATGCACTTATCCCATGTCGGCTCCAACAAAACCTGCTTTCTGCTTTCCCTCGCATTCTGTGCCCTGCTGGTGCTGCTTATTCCCTCCTTACAACCTCCACAGCGTCAGGCGGATCTGCCTCAGCCGCGGCCCCATGCCAAACCCGCCAAACACCCACTCAAAAACTCTCTCTACAGACCAAATGAAGACACCAGGGGTGGTAGTTTTACTCAAACAACTCCACCTGAGAACCTGCAGAAGATGGACGATCTAAACTCGCACTACAGAGACTTCCTGGACTTAAGAGACATTTTTATTGCTGTGAAGACCACTAGGAAGTATCACAAGTCCAGATTGCAGCTCCTGTCCCAGACCTGGGTGTCCAGAGCGAAGGAGCAGACGTTTATCTTCACTGATGGGGAGGACAAGGAGCTCCGGCTGAAAGCAGGGCTGAACATCATCAACACCAACTGCTCGGCGGCTCACACACGCCAAGCCCTGTGCTGCAAGATGTCTGTGGAGTATGACAAGTTCATCGAGTCACAGAAAAAGTGGTTTTGTCATGTGGATGATGATAACTATGTGATCCTGCCCAGTCTACTGGAGCTTCTGTCCTCGTACTCTCACACACAGGATGTGTATCTGGGCCGGCCTAGCCTGGATCATCCTATAGAGGCTGCAGAGAGAGTCAAGAGCGACGGATCGGTGTCAGTGAAGTTCTGGTTTGCCACTGGTGGAGCTGGTTTCTGCATCAGTCGAGGTTTAGCGCTCAAAATGAGTCCATGGGCCAGTCTTGGAAACTTTATCACAACAGCAGAGAAGATCCGTCTGCCAGATGACTGTACAATTGGCTACATCATCGAGGCGCTGCTGGAGGTTCCTCTCACCCACACAGGCCTGTTTCACTCACACCTGGAGAACCTGCAGAGACTGCCTGCAGAAAACATCCTGCGACAGGTGACCCTCAGTTATGGTGGATTCGAGAACAGGAGGAATGTGGTCAGTGTTGGAGGAGCGTTTTCATTGGCTGAAGACCCAACACgGTTTAAAACGGTTCACTGCAAGCTCTACCCAGACACCGAGTGGTGCCCACGCAAGACTCGCCATTGACGTCTGGTATACGAATGCATCATCATGGAGCATCAACTTTCTCATGCTTTCCACAACACTATCTATACCAAAGGAACAGGCAGAATAACTGAGCACAGATTGTGATGGTTGCAAATAAGAAACGCTAGTTAGATCACATTCACAGACTACAGTATGTTGTATCTCCTTTGCCAgaacaaaaatctaaacaatcTTAAACCAACATACATTTACTTAAGCAGAAGAAGAACATATCTCAAAGTGTCTTTCAGTTGGTTTTCATTTATAAACATTGATGTTTTCTCCTGTTTTTAACACAAACTTATGATTGAAGTGATGTGCTGCTCATGTAAATGTATGGGGATTTAAGATTTGTGGTATTTTTATAATGGGAGACAAGACTAATATTgagcaagaaaatgttttttCATTGTATCTGGTACTTTTAAATGAAGAAACAGGGTGGCTGACACTCTTTTTCCTCTTGAAATACTGCGTTCTGAGAACTGCCAAGTGATTTACATAAAGCGAGTCCCTTTCATAAGAGCGTTTCGAAAGGATTGCGCAATTATTTTCTTACTGAAATGATTTTATCCACATTTTTTGTGGCTTTGACATCATCTTTATTGAGTTGTCCTTTTCCTAAAGGCCATAAATATGCCCAGCACAGCCCTTTAGATTTGTGTGCGATGATCTGCAACGTCTCCAGGGATGAAGAAAACTGTATTGATGCATCATCTTAGCATTTTGTTTGCAAGATTTATGCAGGCCAGCTCATCTGCTGCCAATGTTTCTCAGCATGTTCTTCTCggtttgtgttttgtgtatcCAGAAGGCCATTTGCACTCGGTATGCCTCTAGATTTATAGGTTGCCGTTAAGTATTAAGGGAATAGTTTAATACACAAAACGAAAAATGCACTCACTTTCAAGTGGTGTCAAACCTTTTTGGGTTTCTTTTgtctttctgttgaacataaaagaatgctgaaaacctgtaaccattgacattcatagtagattagaaaatacagtggaagtcaatgtttaaagCATTCTTCGAAGTATctcctttagtgttcaacagaagaaagtcaaacaggtttggaacagatgctgaaacaacacaattgtggaggtttttttgggacaacttaattgttttatgttcaatccacttcagttTATTaagcttaattgatttgtgtgtgATGATCTGGATGAAGAAAACGGTAATGATGCAAGGTTTGTGCAGGCCAGCTCATCCACTGCCAATGTTTCTCAGCATGTTCTTCTCTGTTTAAGTTTTGTGTATTCAGAAGGACATTTGCACTCCGTATGTCTCTAGATTTATAGGTTGGCATCAAGTATTAAAGGACTAGTGCATTTTTCATTATGGGTATTAAACCATTTACTCActttcaagtggttttaaacctttatgagtttgttttgtttttctgttacatgaaagaagatattttgaagaatgctgaaagcctgaaaccattgacattcatagtacattaaaaatactggaagtcaatgattcaagcattcttcaaaatatctccttttgtgttcagcagaggaaagtcaaacaggtttggaacaagtacaCTTAAAACGCTTGTTCAGTCTACTTACTTAATATGAGCTGAAAACAATTCTGTTGGCTTTTTTTAGGATAACCCAATTGTTTTacgttcagtccacttaaatttatcaagcttaattgatttgtgttgggacaacatgaatgaattgtgtggagccctgcagtgtaaaatgtgtgtaaataatttGAAGTTTTggctaaactatccctttaagactgaATTGAAGATATACAGACCAAAAAGCATCGGTCCAGATCTTGCTAATTCCTCCATTTGCTTTTTGTGGTtcctattaaaatgttttaacattgAGTTATTTTCATTGAAAGATTGGAAACAAGTGTTCATGTTCCTTCTGATATTTGCACAAACACGTTCCTCACTGCAGGCCAGTGGTTTGCGTGAACATGCCAAAACGATCTCTTTTTCCTAATGTTCTCTGAACGTGCCTGCTCTCCGTTGACACTACCAAATGCTGTTATTGACTGTTCTTTTTGTTTTGCTCCTCtttttgttggtgtttttttttttatctgaggaACTGATAAGGTTGtatgattttgattttaataaatttatttattatgc

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0030154 cell differentiation biological_process
GO:0035284 brain segmentation biological_process
GO:0021592 fourth ventricle development biological_process
GO:0007275 multicellular organism development biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0007389 pattern specification process biological_process
GO:0007399 nervous system development biological_process
GO:0030902 hindbrain development biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0046872 metal ion binding molecular_function
GO:0033829 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5418 Predicted to enable O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity. Acts upstream of or within brain segmentation; fourth ventricle development; and rhombomere boundary formation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Is expressed in hindbrain. Orthologous to human RFNG (RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase).

Ensembl:

ensembl_id ENSDART00000002867

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009873 lncRNA downstream 184858 2856861 ~ 2869584 (-) True XLOC_005075
TCONS_00011066 lncRNA downstream 309801 2703355 ~ 2744641 (-) True XLOC_005073
TCONS_00011064 lncRNA downstream 384942 2625669 ~ 2669500 (-) False XLOC_005072
TCONS_00011065 lncRNA downstream 396498 2645615 ~ 2657944 (-) True XLOC_005072
TCONS_00009869 lncRNA downstream 436932 2579237 ~ 2617510 (-) True XLOC_005071
TCONS_00011067 lncRNA upstream 204361 3281756 ~ 3284909 (-) False XLOC_005083
TCONS_00011068 lncRNA upstream 204751 3282146 ~ 3284844 (-) True XLOC_005083
TCONS_00010793 lncRNA upstream 253635 3331030 ~ 3382684 (-) False XLOC_005085
TCONS_00010794 lncRNA upstream 253635 3331030 ~ 3386819 (-) True XLOC_005085
TCONS_00011069 lncRNA upstream 441773 3519168 ~ 3544016 (-) True XLOC_005086
TCONS_00009877 mRNA downstream 560 3045110 ~ 3053882 (-) False XLOC_005078
TCONS_00009876 mRNA downstream 569 3043308 ~ 3053873 (-) False XLOC_005078
TCONS_00009878 mRNA downstream 743 3049366 ~ 3053699 (-) True XLOC_005078
TCONS_00009875 mRNA downstream 61347 2951186 ~ 2993095 (-) True XLOC_005077
TCONS_00009874 mRNA downstream 114372 2906610 ~ 2940070 (-) True XLOC_005076
TCONS_00009881 mRNA upstream 18304 3095699 ~ 3133483 (-) True XLOC_005080
TCONS_00009882 mRNA upstream 142890 3220285 ~ 3237561 (-) True XLOC_005081
TCONS_00009883 mRNA upstream 171659 3249054 ~ 3252263 (-) True XLOC_005082
TCONS_00009884 mRNA upstream 210388 3287783 ~ 3299149 (-) True XLOC_005084
TCONS_00009885 mRNA upstream 237109 3314504 ~ 3453589 (-) False XLOC_005085
TCONS_00009859 other downstream 1563854 1490472 ~ 1490588 (-) True XLOC_005063
TCONS_00009831 other downstream 2432153 619669 ~ 622289 (-) False XLOC_005047
TCONS_00009912 other upstream 1208971 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009914 other upstream 1218154 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009915 other upstream 1220462 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009917 other upstream 1220832 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009948 other upstream 2322285 5399680 ~ 5418340 (-) False XLOC_005137

Expression Profile

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