RNA id: XM_043218271.1


Basic Information

Item Value
RNA id XM_043218271.1
length 902
RNA type mRNA
GC content 0.45
exon number 4
gene id s100a10a
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 17929689 ~ 17935436 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCACACATGAGACACACGCTGTGCAGGCAGGGAAGTATGATAGGCTGCTTCACAATGTCCTTGCACACAGGACACTGCAACTCCTGCTCCATACTCTTCATGTTGGACTGAAAATGAGGAGGAGAACTCACAAAGTTCGCATAACTCATACACTTGTATGCTGTGCTGTAATCAATGCATTGCTCAACTTCCTCTGATAAGACCTTCTCCTGCCCATGGGCTCGGTCATATAAAGTCCTGAGAGAGAGATAGCCAGCATTTCTCAAATTCTTCATTCAGACACTCAAACGCGAGCAGCCATGCCATCCGAGCTAGAGACCGCCATGGAGTCCCTCATCATGGTATTCCACCGCTACGCCGGAAAAGAGGGTAAGAGCGGCACCCTGACCCGCCGTGAACTCCGAACCCTGATGGAGAACGAGCTCTCCGGGTTTCTCAAGtcTCAGAAGGATCCGACTACCATAGACAGAATTATGAAGGACTTGGATGCCAATGGAGATGGCGAGGTGAACTTTGAGGAGTTTGTGTCTTTGGTTGTGGGTTTGTCCATCGCCTGTGAAGCGTGCTATAGGATGCAGTTAAAGAAGACATCCAGCTGGAAATGAAGAGGAATATGATCCGTGCAGATAAACTGCAAAGTCGATCCCGTTGTCTATTAAAATATCTGattgttttttacttttcttttgagTTTGTGTATGTACTTCAGTATCGAatgaaaaccataaaaatgacTTTCGCTGGCAGGTTAAAGTacagtgggtgtgtgtgtgtgacaggtcTTAACGCTCTTTGGCCTACAGACAGCATTCTGTGAGGTTTTAATTGCTGAAACCAAATATGTTCAAACATCTTTCTGTGCtaaactttatattaaaaatgtctatgcGGTTATAACAAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198341 lncRNA downstream 58834 17869131 ~ 17871956 (-) True G134298
TU198337 lncRNA downstream 59271 17869131 ~ 17871519 (-) False G134298
TU198352 lncRNA downstream 73604 17852172 ~ 17857186 (-) True G134299
TU198298 lncRNA downstream 131965 17789551 ~ 17798825 (-) False G134273
TU198370 lncRNA upstream 4046 17938947 ~ 17947834 (-) True G134309
TU198380 lncRNA upstream 30674 17965575 ~ 17966539 (-) True G134317
TU198382 lncRNA upstream 83068 18017969 ~ 18018262 (-) True G134319
TU198291 lncRNA upstream 249217 18184118 ~ 18187126 (-) False si:dkey-266f7.5
TU198394 lncRNA upstream 290708 18225609 ~ 18227143 (-) False cks1b
XM_043217635.1 mRNA downstream 1594 17916500 ~ 17929196 (-) True snx27a
XM_043217265.1 mRNA downstream 135830 17792359 ~ 17794960 (-) True crabp2b
XM_043218148.1 mRNA downstream 142691 17780819 ~ 17788099 (-) True scamp3
XM_043217247.1 mRNA downstream 151634 17772595 ~ 17779156 (-) True rnf115b
XM_043217517.1 mRNA downstream 161016 17741746 ~ 17769774 (-) False ash1l
XM_043217531.1 mRNA upstream 34583 17969484 ~ 17982455 (-) True efna1a
XM_043217222.1 mRNA upstream 96408 18031309 ~ 18101591 (-) True efna3a
XM_043217699.1 mRNA upstream 234622 18169523 ~ 18188029 (-) False si:dkey-266f7.5
XM_043217700.1 mRNA upstream 234622 18169523 ~ 18187098 (-) False si:dkey-266f7.5
XM_043217705.1 mRNA upstream 234622 18169523 ~ 18178679 (-) False si:dkey-266f7.5
TU198224 other downstream 314552 17613480 ~ 17616238 (-) False LOC122324164
TU197840 other downstream 596556 17330697 ~ 17334234 (-) True G133948
TU197841 other downstream 646046 17283332 ~ 17284744 (-) True G133949
TU197783 other downstream 712041 17217788 ~ 17218749 (-) False LOC122323474
unassigned_transcript_2205 other downstream 1030014 16900705 ~ 16900776 (-) True trnap-ugg_15
TU198381 other upstream 75981 18010882 ~ 18011399 (-) True G134318
XR_006247044.1 other upstream 249240 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other upstream 249240 18184141 ~ 18188020 (-) False si:dkey-266f7.5
XR_006247042.1 other upstream 249240 18184141 ~ 18188018 (-) False si:dkey-266f7.5
TU198770 other upstream 941713 18876614 ~ 18933139 (-) False smim13

Expression Profile