RNA id: TU198412


Basic Information

Item Value
RNA id TU198412
length 4148
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G134332
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18290057 ~ 18303657 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAATTAAGCATTTTATATTCTATTGAACTGCAATTATTAGTGtagaaaaatgttaatgcatcAAGAAATGAAACATATTTGTAGTTTTAGTGTAGATCAAAATGCgattatgtgtatgtatatgtgtactgataattatattacatgagGAAACAGACATAAAATCATCGTTCGCAACTAAAATATCAGACTGCATAATAAAGAACaagtatgttattttataaaatcaagatttttagttttttataagtctaattgtaaaattatattcagttcatatattattttaattgtttactcATATTTAAGACGCATTAAAAtgggaacattttaataatttcaatcGTTTCATTGTACAAAGAGATCTGCTAGAGACCGTTTATATacactacagtaaaaaaatgaaagcctGATGTGCCACAAACATCATTTACTGCATTACAGAAGATCATTCAAAGTTtcatagcaataaaaaaaaagaatataccttgatttgttacatttttacttaCAAAAGTATTACCAATTACTGTAGcagacaaaaatgcatttatacagttttaacAAATTTGTCAAAAGTACTATTCATGATTCCTTTGcttatttctttgtttctatCATTCAGCAAACACTTGTTGTCCAAAGTTTGTTTCTTGTTGTTTCTCAGTACTTCTGCAGCTGTGCTCAGCACCCCTCTGTTGTTTAGTGAAAGTGTCCAgcttttgttttaacttttttacatGTGCACAGTTTAATTGCTTTATGAACGTCTCATTTTGAATGTATCttccaaacatttatttgcctGATGTACAGAGATCCAATACCAGTCAGCAGGGATGTCCGCTGGTTTTAAACGGTATTTCTCTGCAAATGCTTTGTTGTACTTTGCGAAGATGTACTTCCAGAAATCGGTGGCCTCGATAGTAGTGTCAGGCTGTATCAACCAATCAGGATAGATCTGTCTGTATTCCTTGTTTGGATGCCACTGAAATCCTGTATCTTTATGGCGGAATGTCATTTCACTAGCAACGAGAGATGAGCAAATGTCAGGAACTAGTTTATCGGTTTGGACCCAACTGTAGCAACCAATGCCTTGAGGCCGATGGATAGAGACAAAATGCATGGCGTGCTTTTTCCCGCCGGCTTCGCAAGGTGCGCTGCAGAATGGACACTTCTTCCCACAGCCAAACACTCTGCTGAAGAGCACCTGTTGAGGATTGCTCACCGAAAGTCCGGTTAGCTTCTGTTTTACGTTCTTTTCCTCACGTAGACGCTCTTCTAAGCgtttatgcattttttctaTCGATGATTTAAAGCAATCAATAAACTCTGCGGGGTTTGAGTTGTTCAAAGCCAGGCTCGCTTTGAGTGTGTCACTTGGTATGACCAACTCTTTATTAAGACGTCTGCAGACGTAGGTCACAAAACTGCCGATGCCACTGCAGACGTCAGCTTTGCTCTGTGCGCTGTCGACAGCTTCCTTAAGTTTGTTGATGATCACATTCAGATGTTTAATTTCCAGCTTTGAAAGAGCGCCTTTCTTTGAAAAATGTTCTACGATCTTCTCTGAAATCCACGCAGTTACATATGCTTCATAGTTTTGTACATATTCCAGAATATTGCTGAAGTTATCCTCCCAAAGTAGCTTTTTTAAAAGCGAAAACTGGAAAAATGAGCGCGTGCCAAAATCTAGGCCTGTTTCTCCTGACAGCATTTCATCCACAATGTCAGGTCCGAGACGTTTCTTGATGTATTCCATCACAGCAGGGCCAAAGCATTTATTCATACACGTCTCTGCCTTGTTCTGACACTGATCTCGTTGGTAGTAGAGGTCTTTAAAGTCAGCTAACCATTCCTCCTTGAAGTTTTCAAGGGATTTCAAAGGGTCATTTCTCTGTATGTAGTCGTCGTGCATTTTCTGGAAAGCTCTTGCTGCGATCCCGCAGATGTGAATCTTGAGAGCGGCTTCGACTTCAGGGTTTATCTCTGATTCACTGCAGCTTTCCAAATTCTTGTCAATGGAGCACAACAGTTCTTGAATGTCAGCACTATTGTAGTCTGATTTTGGTTCTGTCttatttgcaataaatgtttCGCTCTGATGTATTATTTTGTCGCATGCCAATTGCATCAACTTATGTTTTTTACTCCTCTCTGCTGGTCGCAGAGAACCTctaattttttgaaaaatattcattttcataatgGCAAAAAACTTTCCAGTGCCACACTGATCTAGACTGGTGACCTTTGACAGCATCTCACGTACTGCTCCACTTTTCATTTCTAAGTTGTTGTATAGCAGTCTGTACGTCTCCTTCACCACATCTTGCTTTGGTAGAGCTGTAAAATAATTGTCCTTCAGAATGTCGTTCCATATTTTTTCAAACTCTTCATTTAGTTCACTTTCGGAGAGAGTATTTGTTCTACTCCTGCAGACTTGAATCAAACTGAGCACTTTGTCTCTCATGGTATCCCTCTGTTCTTGCTTTATATGTTCTACCTTCTCAATTCCCTTTTGTATCAAAATAGCATTCTCCAGTTTAATCCGTATATCCATCTCGACCTCTCTTCGAAGTCCCCGTGCGCTGTTTAAAAAGTCCTCTTTGTGATTTTCAACAAGATGCGCGTGTTCCAACTCATTTTCGAAATATTGCTGAATTGTatctaaaagatttttttcctccttttccaACTCATTATCAGCTTCACAGTTTAAAGCAGCCAATACTCTATCAAGGTTAACTGCACTTTCTGACTGCACGGACATTACACCCATGTTGGAGATTTTGGTCTCAGACTTTGTGTACCAGTCAATCATGTGCTTCTTGAAGGCCCATTCCCAAGTGTTGAACTCAGCGCAAAGTTTGGAGTACGCTTCAGCGACGAGGCTGTTGCGAAAACTGAAGATGAAGTTTTCGAATTGAACAGCCTTCCAGAGACTGCGTATCCATTCAGCAAATTCCATGAAGTCCTGTGCTGGGAATTTAGTTTTCCTCAAGACGTTAAGCATGCCATCTTTAAAGTTACTCACCTCCTCACTGTAACCAGTGTTAACAGGTGCCATTGGAGGAGTTCCAAGCCACAATCCAGGTATGTACCAGTTGTTTTTATTGATGTCATACTCTAGAATGTCTGTAAATTTATAATTGTTgctctttttctccattttagcAGCTGCGTTAGTCATATCGTCTAGCTGTTGAAAGAAACTGATTCGCTCTCTCAAGATTTTATCCTGCACAGCAACATCTGCTGTGTTTTGGTGCGCAAAATGACAACAGGGCTTTTTCCCCACCTCCTTCATGCGAAGAAAGGCATGGACAACAATTTGCAAAGTGTCTTTCATTTCTGTAGCATTTTCCATGGCAATGTTGATGATAGTAATGTCACTCAGCCCAACAACAAGGGTTGCAAGTTCGTTGTCATGCTCATAACTATCGTCTAATTTTGCCAGCTCTAGAGATTTTAACCCCTCAGTGTCGATTACAAGGATGTAGTCACACTTAAGCTCTGATCTGAATTCCTCAGATACACCTATTAGAAGCATGAAGGCTCCTCTCGTGCATCTGCCACTGCTCACAGCAAACTGAACTCCAAACATTGTGTTGAGGAGAGTCGACTTCCCACTGCTCTGAACTCCTAAGACGGTCACGACTCGTATTTTGTTGTGAGGTGATGTGAGTTTGTTAAGTGCCGCAAGGACATCTCCAATCCACGTCAGGGGAATATTTGATGCGTCTCCATCAATAAGTTCCAGAGGAAACCCATTCAGCATCAACTGAGCACAGATTTCTGGCAATTTTTGAAGGTGAGGGTGGTTCCAGGTTTTTTGGAAGTGGGCAGACTCGTAGAGTTGGCTTAACTCTCTCATAAAGTGTTGGAGTCCTAACGAGCTGTTGGCATTTTCCATATCTCTGAGACATTCTTTATCTTCTGTGGGATTCTGACATGCATCCCCATACGACTCCTCAAACCTGGACgtatgcttttttgtttgaagaTCCAAATTTATTTTCATCCATTTGAGAAAATATAGTTGCTCTTCTAAAGAGCAGTACAAGccagaaatgaaatgatttattgCTTCGTTCATCCTATGGTTTCCTTGTTCCATTCTTAGATCGTGGATTTGACATTTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198421 lncRNA downstream 20997 18268305 ~ 18269060 (-) True G134334
TU198417 lncRNA downstream 21071 18268408 ~ 18268986 (-) False G134334
TU198419 lncRNA downstream 21166 18268408 ~ 18268891 (-) False G134334
TU198394 lncRNA downstream 62914 18225609 ~ 18227143 (-) False cks1b
TU198393 lncRNA downstream 62914 18225808 ~ 18227143 (-) False cks1b
TU198468 lncRNA upstream 113369 18417026 ~ 18417853 (-) True G134365
TU198531 lncRNA upstream 153508 18457165 ~ 18460899 (-) True G134411
XR_006247107.1 lncRNA upstream 219543 18523200 ~ 18532017 (-) False LOC122324145
XR_006247106.1 lncRNA upstream 219543 18523200 ~ 18532017 (-) True LOC122324145
XR_006247108.1 lncRNA upstream 219543 18523200 ~ 18530637 (-) False LOC122324145
XM_043217049.1 mRNA downstream 8941 18269171 ~ 18281116 (-) False tuft1b
XM_043217052.1 mRNA downstream 8941 18269171 ~ 18281116 (-) False tuft1b
XM_043217051.1 mRNA downstream 9016 18269171 ~ 18281041 (-) False tuft1b
XM_043217053.1 mRNA downstream 9032 18269171 ~ 18281025 (-) False tuft1b
XM_043217050.1 mRNA downstream 13006 18269171 ~ 18277051 (-) True tuft1b
XM_043217696.1 mRNA upstream 81 18303738 ~ 18321719 (-) False cgnb
XM_043217697.1 mRNA upstream 81 18303738 ~ 18321719 (-) False cgnb
XM_043217695.1 mRNA upstream 81 18303738 ~ 18321719 (-) True cgnb
XM_043217623.1 mRNA upstream 19154 18322811 ~ 18328270 (-) False pygo2
XM_043217622.1 mRNA upstream 19154 18322811 ~ 18328266 (-) True pygo2
XR_006247044.1 other downstream 102036 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other downstream 102037 18184141 ~ 18188020 (-) False si:dkey-266f7.5
XR_006247042.1 other downstream 102039 18184141 ~ 18188018 (-) False si:dkey-266f7.5
TU198381 other downstream 278658 18010882 ~ 18011399 (-) True G134318
TU198368 other downstream 354621 17929689 ~ 17935436 (-) True s100a10a
TU198770 other upstream 572957 18876614 ~ 18933139 (-) False smim13
TU198769 other upstream 623864 18927521 ~ 18933139 (-) False smim13
XR_006246998.1 other upstream 1239125 19542782 ~ 19652807 (-) False khdrbs3
XR_006246997.1 other upstream 1239125 19542782 ~ 19652806 (-) False khdrbs3
XR_006247087.1 other upstream 1367130 19670787 ~ 19688386 (-) False LOC122324012

Expression Profile