RNA id: TU198419


Basic Information

Item Value
RNA id TU198419
length 484
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G134334
representative False

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18268305 ~ 18269060 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgttcttaaatatatgattgtgtgcatttatatattcacaataaatacacacagtacacacacattatttgatcaaacactTTTATGTTCAAACACTTATAAATGCgatgaatcgtttgacagcgctaattaAAATGCATCCTCCTGTATCTGTACGCGTGTATACTCTAATATACATTTCTGAATTCACTGTACCTTGTaaagctgtctttttttttttctttggaaactGCGATTGTATTGTGTTTTGAAGAACGACTGTTTTTCTGTTACTGTATTCTGTGCTCAACCCTACCTTTCCATCCATCTcttattaaatgtgaaaaatttgTTACTGTAGATGGAATTGTAGCACTACGCACATTTCTCTGGTATTGTACTTTCCCTGgtttatgtatttatcttaagggctaattaataaaaagtatttaagatTGCTCACAATATGTGCAAGAGAAAGTAACCTTTTCTTTTATAACCGGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198394 lncRNA downstream 41265 18225609 ~ 18227143 (-) False cks1b
TU198393 lncRNA downstream 41265 18225808 ~ 18227143 (-) False cks1b
TU198291 lncRNA downstream 81282 18184118 ~ 18187126 (-) False si:dkey-266f7.5
TU198382 lncRNA downstream 250146 18017969 ~ 18018262 (-) True G134319
TU198380 lncRNA downstream 301869 17965575 ~ 17966539 (-) True G134317
TU198411 lncRNA upstream 21166 18290057 ~ 18303657 (-) True G134332
TU198412 lncRNA upstream 21166 18290057 ~ 18303657 (-) False G134332
TU198410 lncRNA upstream 23214 18292105 ~ 18303657 (-) False G134332
TU198468 lncRNA upstream 148135 18417026 ~ 18417853 (-) True G134365
TU198531 lncRNA upstream 188274 18457165 ~ 18460899 (-) True G134411
XM_043217811.1 mRNA downstream 1160 18245489 ~ 18267248 (-) False ubap2l
XM_043217813.1 mRNA downstream 1230 18245489 ~ 18267178 (-) False ubap2l
XM_043217810.1 mRNA downstream 1230 18245489 ~ 18267178 (-) True ubap2l
XM_043217815.1 mRNA downstream 1231 18245489 ~ 18267177 (-) False ubap2l
XM_043217816.1 mRNA downstream 1231 18245489 ~ 18267177 (-) False ubap2l
XM_043217049.1 mRNA upstream 280 18269171 ~ 18281116 (-) False tuft1b
XM_043217052.1 mRNA upstream 280 18269171 ~ 18281116 (-) False tuft1b
XM_043217051.1 mRNA upstream 280 18269171 ~ 18281041 (-) False tuft1b
XM_043217053.1 mRNA upstream 280 18269171 ~ 18281025 (-) False tuft1b
XM_043217050.1 mRNA upstream 280 18269171 ~ 18277051 (-) True tuft1b
XR_006247044.1 other downstream 80387 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other downstream 80388 18184141 ~ 18188020 (-) False si:dkey-266f7.5
XR_006247042.1 other downstream 80390 18184141 ~ 18188018 (-) False si:dkey-266f7.5
TU198381 other downstream 257009 18010882 ~ 18011399 (-) True G134318
TU198368 other downstream 332972 17929689 ~ 17935436 (-) True s100a10a
TU198770 other upstream 607723 18876614 ~ 18933139 (-) False smim13
TU198769 other upstream 658630 18927521 ~ 18933139 (-) False smim13
XR_006246998.1 other upstream 1273891 19542782 ~ 19652807 (-) False khdrbs3
XR_006246997.1 other upstream 1273891 19542782 ~ 19652806 (-) False khdrbs3
XR_006247087.1 other upstream 1401896 19670787 ~ 19688386 (-) False LOC122324012

Expression Profile