RNA id: TU198421


Basic Information

Item Value
RNA id TU198421
length 756
lncRNA type inter_gene
GC content 0.25
exon number 1
gene id G134334
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18268305 ~ 18269060 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atatatatatatatatatatatatatatatatatatatatatttatttatttatttattgtgatcaATCATATccgaattatattttaaataatgtttgtgtactgtgtttttaaatatatttatattgatataatttatattataataacatattattaaacatgaatttgttcttaaatatatgattgtgtgcatttatatattcacaataaatacacacagtacacacacattatttgatcaaacactTTTATGTTCAAACACTTATAAATGCgatgaatcgtttgacagcgctaattaAAATGCATCCTCCTGTATCTGTACGCGTGTATACTCTAATATACATTTCTGAATTCACTGTACCTTGTaaagctgtctttttttttttctttggaaactGCGATTGTATTGTGTTTTGAAGAACGACTGTTTTTCTGTTACTGTATTCTGTGCTCAACCCTACCTTTCCATCCATCTcttattaaatgtgaaaaatttgTTACTGTAGATGGAATTGTAGCACTACGCACATTTCTCTGGTATTGTACTTTCCCTGgtttatgtatttatcttaagggctaattaataaaaagtatttaagatTGCTCACAATATGTGCAAGAGAAAGTAACCTTTTCTTTTATAACCGGcataacagatttatttttttttatataatttgacaattttataattaaagacatttagTGAATTATAATTGTCCCCAGTTTTTCctacaatatatactatatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198394 lncRNA downstream 41162 18225609 ~ 18227143 (-) False cks1b
TU198393 lncRNA downstream 41162 18225808 ~ 18227143 (-) False cks1b
TU198291 lncRNA downstream 81179 18184118 ~ 18187126 (-) False si:dkey-266f7.5
TU198382 lncRNA downstream 250043 18017969 ~ 18018262 (-) True G134319
TU198380 lncRNA downstream 301766 17965575 ~ 17966539 (-) True G134317
TU198411 lncRNA upstream 20997 18290057 ~ 18303657 (-) True G134332
TU198412 lncRNA upstream 20997 18290057 ~ 18303657 (-) False G134332
TU198410 lncRNA upstream 23045 18292105 ~ 18303657 (-) False G134332
TU198468 lncRNA upstream 147966 18417026 ~ 18417853 (-) True G134365
TU198531 lncRNA upstream 188105 18457165 ~ 18460899 (-) True G134411
XM_043217811.1 mRNA downstream 1057 18245489 ~ 18267248 (-) False ubap2l
XM_043217813.1 mRNA downstream 1127 18245489 ~ 18267178 (-) False ubap2l
XM_043217810.1 mRNA downstream 1127 18245489 ~ 18267178 (-) True ubap2l
XM_043217815.1 mRNA downstream 1128 18245489 ~ 18267177 (-) False ubap2l
XM_043217816.1 mRNA downstream 1128 18245489 ~ 18267177 (-) False ubap2l
XM_043217049.1 mRNA upstream 111 18269171 ~ 18281116 (-) False tuft1b
XM_043217052.1 mRNA upstream 111 18269171 ~ 18281116 (-) False tuft1b
XM_043217051.1 mRNA upstream 111 18269171 ~ 18281041 (-) False tuft1b
XM_043217053.1 mRNA upstream 111 18269171 ~ 18281025 (-) False tuft1b
XM_043217050.1 mRNA upstream 111 18269171 ~ 18277051 (-) True tuft1b
XR_006247044.1 other downstream 80284 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other downstream 80285 18184141 ~ 18188020 (-) False si:dkey-266f7.5
XR_006247042.1 other downstream 80287 18184141 ~ 18188018 (-) False si:dkey-266f7.5
TU198381 other downstream 256906 18010882 ~ 18011399 (-) True G134318
TU198368 other downstream 332869 17929689 ~ 17935436 (-) True s100a10a
TU198770 other upstream 607554 18876614 ~ 18933139 (-) False smim13
TU198769 other upstream 658461 18927521 ~ 18933139 (-) False smim13
XR_006246998.1 other upstream 1273722 19542782 ~ 19652807 (-) False khdrbs3
XR_006246997.1 other upstream 1273722 19542782 ~ 19652806 (-) False khdrbs3
XR_006247087.1 other upstream 1401727 19670787 ~ 19688386 (-) False LOC122324012

Expression Profile