RNA id: TU198549


Basic Information

Item Value
RNA id TU198549
length 483
lncRNA type intronic
GC content 0.35
exon number 2
gene id G134428
representative True

Chromosome Information

Item Value
chromosome id NC_056717.1
NCBI id CM032086.1
chromosome length 20532727
location 18572068 ~ 18586326 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtcatttttaatttaaacaatgaaGAATATATGTCATTCGCCATTAGACATACAGTATActgcatttattgaatttattgcattttcataGTCAGGCTAAGTgtctttggatttttttttttttttgtaagaaataacGTGCCACACATCAGTTTGCATTCATTCGTGTCCTCAATATGAGCACTTTTCCAAGGTCCTCTTTGATTTGGATTATTGGAAGATGTTCCTTCATCGTTCTGATTTGCAAAGCCAGGCTCCATATGTAGCATTTCCAACTCTGTAAATGCAGTCCTCTTATTCAGATAGTCTTTGGTGAATAGTTTTACCTCTGTTCCTTGTGgtcagaaataaatgtttgctgTAGCTTGGTGTTTAATTGGACAGAAAAGATGGAAATGGCAGGATGTTCAGCTCTTGCATAATCAAGTCGCTGCAGTCTGGTCTTTTTCCAGTCATACATattattttttgggggtttttttt

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198546 lncRNA downstream 38568 18533173 ~ 18533500 (-) True G134426
XR_006247107.1 lncRNA downstream 40051 18523200 ~ 18532017 (-) False LOC122324145
XR_006247106.1 lncRNA downstream 40051 18523200 ~ 18532017 (-) True LOC122324145
XR_006247108.1 lncRNA downstream 41431 18523200 ~ 18530637 (-) False LOC122324145
TU198545 lncRNA downstream 41447 18523697 ~ 18530621 (-) False LOC122324145
TU198611 lncRNA upstream 102587 18688913 ~ 18689112 (-) False LOC122324083
TU198672 lncRNA upstream 245906 18832232 ~ 18832849 (-) True G134504
TU198837 lncRNA upstream 461195 19047521 ~ 19057963 (-) True G134592
TU198898 lncRNA upstream 676392 19262718 ~ 19264297 (-) True G134632
XR_006247047.1 lncRNA upstream 828573 19414899 ~ 19421472 (-) True LOC122323683
XM_043217765.1 mRNA downstream 57390 18511650 ~ 18514678 (-) True exosc7
XM_043217766.1 mRNA downstream 60563 18506695 ~ 18511505 (-) True clec3bb
XM_043217085.1 mRNA downstream 76510 18494100 ~ 18495558 (-) True limd1b
XM_043217029.1 mRNA downstream 78158 18482654 ~ 18493910 (-) True recql4
XM_043217072.1 mRNA downstream 100394 18467978 ~ 18471674 (-) True sqleb
XM_043217139.1 mRNA upstream 39270 18625596 ~ 18641283 (-) True si:ch211-80h18.1
XM_043217148.1 mRNA upstream 39270 18625596 ~ 18641277 (-) False si:ch211-80h18.1
XM_043217141.1 mRNA upstream 39270 18625596 ~ 18641277 (-) False si:ch211-80h18.1
XM_043217152.1 mRNA upstream 39270 18625596 ~ 18641277 (-) False si:ch211-80h18.1
XM_043217150.1 mRNA upstream 39270 18625596 ~ 18641277 (-) False si:ch211-80h18.1
XR_006247044.1 other downstream 384047 18184141 ~ 18188021 (-) False si:dkey-266f7.5
XR_006247043.1 other downstream 384048 18184141 ~ 18188020 (-) False si:dkey-266f7.5
XR_006247042.1 other downstream 384050 18184141 ~ 18188018 (-) False si:dkey-266f7.5
TU198381 other downstream 560669 18010882 ~ 18011399 (-) True G134318
TU198368 other downstream 636632 17929689 ~ 17935436 (-) True s100a10a
TU198770 other upstream 290288 18876614 ~ 18933139 (-) False smim13
TU198769 other upstream 341195 18927521 ~ 18933139 (-) False smim13
XR_006246998.1 other upstream 956456 19542782 ~ 19652807 (-) False khdrbs3
XR_006246997.1 other upstream 956456 19542782 ~ 19652806 (-) False khdrbs3
XR_006247087.1 other upstream 1084461 19670787 ~ 19688386 (-) False LOC122324012

Expression Profile